Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0296 ATGCCGCGGGGGAAGATCAGGGCGAAGCTCCGAAGGAGCCATCTTTACACATTCGGTTGCGTTCGTCCAACCACCACCGATGAGTTGCCTAATCCACTTCATGGTCCTGGATTCTCAAGAACAGTATATTGCAACCAGCCTCTAATCCATGAAAAAAATTCTCTATTTTACTGCAGGAATAATGTATCAACTACCAAATACAATGTTATCACATTTTTCCCTAAGGCACTCTTTGAACAATTTCGAAGGGTTGCTAATATATACTTTCTCCTGGCTGCTTGCCTGTCAGTGTCTTCGATTTCGCCATTTAGCCCAATGAGCATGATTGCTCCTTTGGTGTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGGGTTGGAAGATTTTGGCAGGTTCCTTCAGGATCTCAAAGTTAATGGTCGGAAAGCTAGTGTCCATAAAGGTGATGGTGTTTTTGGTCCCAGGTCATGGCAGAATATTATGGTTGGGGATATCGTAAAAGTGGAGAAGGACCACTTTTTCCCATCAGACTTACTTCTCTTGTCATCAAGTTATGAAGATGGGATATGCTATGTTGAGACGATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATGTTTGGAGACTACCTTGTCTCTAGATAATGATAAAGCTTTTGAGGGTTTCTCAGGAACAATACATTGTGAAGACCCAAATCCGAATCTTTATACTTTTGTTGGCAACTTTGAGTATGAGAATCAGGTTTATGCTCTTGATCCTAGTCAAATTCTACTCCGAGATTCAAAGCTTAGGAATACTGATTATGTCTACGGAGTGGTCATTTTCCCTGGTCACGATAGCAAAGTCATGCAGAATTCTACAAAATCACCTTCAAAAAGGAGTACAATAGAGAAAAAGATGGATTATATCATATACATTCTTTTCACTGTGCTTATACTGATATCTTTTATTAGTTCAATAGGATTTGTTGCCAAGACCAAGTACCAAGTCACAAAATGGTGGTACTTACGGCCTGACAATATTGAAGACCAGTATAACCCCAGGAAAATTTTATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATTTGATACCCATCTCTCTTTATGTTTCAATTGAGATTGTAAAGGTATTACAAGCAACCTTCATTAACAAAGACATTCACATGTATGATGAAGTAACTGGGACTCCAGCCAATGCGCGGACATCAAATTTGAATGAAGAGTTGGGCCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGATTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTGTGTGCTAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATATTGAGGATCAGGATTCGGATCTCTCTAGTTTCCCCATGTCTAAGAGTAATGTGCCATCGAAAAAGGTTACAGCAGGTGAAGAAATTGTACTGGAGACTATTGTTACTTCCAAGGTTGATGAGAACCAAAAGCCTCCCATTAAGGGATTTGGTTTTGAAGACAACCGTCTCATGAATGGTAACTGGTTGAACGAGCCCTATGCCAATGTTCTTTTGATGTATTTCCGAATATTAGCAGTTTGCCATACTGCAATTCCTGAGCTGAATGAGGAGATTGACAGTATTATATACGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTCGAGTTTTATAAAAGAACTCAATCAACCGTTGTAGTACGTGAAAGATTCGCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATCTGTTGGATTTTACTAGCAAAAGAAAGCGTATGTCTGTGATTGTGCGTGATGAGGAGGGAAGCATTATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGATTGTCAAAGAATGGAAAACAATATTTGGAGGCTACTACTAAACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTACAGAAAGCTTGATGAGCAAGAATTCTCTGATTGGAATAATGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGACAGAGAGGTGACGCTTGAGCGGTTATCAGATATTATCGAAAGAGAGTTGATTCTTGTCGGGGCTACTGCTGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATCGATAAACTTGCCCAAGCTGGTCTAAAGATCTGGGTATTGACAGGGGATAAGATGGAAACTGCAATTAACATTGGATTCGCTTGTAGTTTGCTACGACAGGGCATGAAGCAAATCTGTATCACTCTCCCAAATTCAGATTCACTAACCAATGATAGCAAAGAGGTTATTAAAAGCTATATCTTGAATCAAATCACCAATGCCTCACAAATGATAAGACTGGAGAAGGATCGTCATGCGGCATTTGCATTAATTATTGAAGGGAAAACTCTCACATATGCTTTAGAAGATGATGTCAAGCATCATTTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATTTGCTGTCGTGTGTCTCCAAAGCAAAAGGCACTGGTAACAAGGTTAGTGAAACAAGGAACTGGGAAGACCACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAGGAAGCAGATATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTTCTATTGCCCAATTTCGGTTTTTGGAGCGGCTTCTAGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCGCAAATGATATGCTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGACCTATGCGGGCTTCTCTGGTCAATCGGTTTATGAAGACTGGTACATGTTATTGTTCAATGTTGTTCTTACATCATTGCCGGTCATTTCACTTGGTGTTTTTGAACAAGATGTTTCATCTGAAGTTTGCTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAGAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATACCTCCCTCATTACCTTCTTCCTCGTCATCATTATTTTCTATGATCAAGCATTCCGTTGGGATGGCCAGACTGCAGATATGGATGCCGTCGGTACCATAATGTTCACTTGCATCATCTGTGCTGTCAACTGCCAGATTGCACTGACAATGAGCCATTTTACATGGATTCAACACGTCTTTGTGTGGGGAAGCATAGCCACTTGGTATCTCTTTCTCGTAATATTTGGAATGCTTCCTGTGGCGTACTCCAAGAACGCCTACCAAATTTTGGTTGAAGTTCTTGCTCCCGCGCCTATTTATTGGACAGCAACCCTCATAGTAACAATTACATGCATTCTTCCATATCTTGTCCACATATCCCTCCAAAGATGTTTCAATCCCATGGATCATCACATTATTCAAGAAATCAAACACTACAGAAAGGACATCGAAGATCAAGGCATGTGGAAGAGGGAGCGTTCTAAAGCAAGACAGGAAACACAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATGAGACAGTTGAGAGGGAAGCTTCAGAAGAAGACAACTTCAGTGGGATTTTTTTCACCTTCCTTTAAAATAAAATAA 3681 0.4083 MPRGKIRAKLRRSHLYTFGCVRPTTTDELPNPLHGPGFSRTVYCNQPLIHEKNSLFYCRNNVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSVSSISPFSPMSMIAPLVFVVGLSMAKEGLEDFGRFLQDLKVNGRKASVHKGDGVFGPRSWQNIMVGDIVKVEKDHFFPSDLLLLSSSYEDGICYVETMNLDGETNLKVKRCLETTLSLDNDKAFEGFSGTIHCEDPNPNLYTFVGNFEYENQVYALDPSQILLRDSKLRNTDYVYGVVIFPGHDSKVMQNSTKSPSKRSTIEKKMDYIIYILFTVLILISFISSIGFVAKTKYQVTKWWYLRPDNIEDQYNPRKILLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINKDIHMYDEVTGTPANARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVCASEVELAAAKQMASDIEDQDSDLSSFPMSKSNVPSKKVTAGEEIVLETIVTSKVDENQKPPIKGFGFEDNRLMNGNWLNEPYANVLLMYFRILAVCHTAIPELNEEIDSIIYEAESPDEGAFLVAAREFGFEFYKRTQSTVVVRERFAASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGSIILFCKGADSIIFDRLSKNGKQYLEATTKHLNEYGEAGLRTLALAYRKLDEQEFSDWNNEFQKAKTAVGPDREVTLERLSDIIERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITLPNSDSLTNDSKEVIKSYILNQITNASQMIRLEKDRHAAFALIIEGKTLTYALEDDVKHHFLGLAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFETYAGFSGQSVYEDWYMLLFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYTSLITFFLVIIIFYDQAFRWDGQTADMDAVGTIMFTCIICAVNCQIALTMSHFTWIQHVFVWGSIATWYLFLVIFGMLPVAYSKNAYQILVEVLAPAPIYWTATLIVTITCILPYLVHISLQRCFNPMDHHIIQEIKHYRKDIEDQGMWKRERSKARQETQIGFTARVEAKMRQLRGKLQKKTTSVGFFSPSFKIK* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0296 1226 Gene3D - 718 919 IPR023214 -
Lan10g0296 1226 Gene3D - 432 456 IPR023299 GO:0000166
Lan10g0296 1226 CDD P-type_ATPase_APLT_Dnf-like 59 1039 - -
Lan10g0296 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1216 - -
Lan10g0296 1226 SFLD p-type atpase 405 930 IPR044492 -
Lan10g0296 1226 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lan10g0296 1226 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Lan10g0296 1226 SUPERFAMILY HAD-like 417 934 IPR036412 -
Lan10g0296 1226 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 851 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan10g0296 1226 Gene3D - 129 288 - -
Lan10g0296 1226 SFLD Haloacid Dehalogenase 405 930 - -
Lan10g0296 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Lan10g0296 1226 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lan10g0296 1226 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Lan10g0296 1226 Gene3D - 541 697 IPR023299 GO:0000166
Lan10g0296 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Lan10g0296 1226 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1216 - -
Lan10g0296 1226 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
Lan10g0296 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 685 IPR023299 GO:0000166
Lan10g0296 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1150 IPR023298 -
Lan10g0296 1226 Pfam Cation transport ATPase (P-type) 548 649 - -
Lan10g0296 1226 Gene3D - 419 431 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0296 Lan-Chr10 1948185 1955724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0296 1 1220 Primary Pumps ATPases AT1G17500 73.628 0.0 1889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0296 K01530 - gmx:100778710 2077.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2148 6 31938257 31945258 Lan10g0296 10 1948185 1955724 LSH
Lan10g0296 10 1948185 1955724 Lan3g0234 3 1531093 1537292 LSH
Lan10g0296 10 1948185 1955724 Lan9g0631 9 9274646 9282241 PCT
Lan9g0631 9 9274646 9282241 Lan10g0296 10 1948185 1955724 PCT