Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0295 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGTTCTGTTCCAAAACTTGCAGGTCTGCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTACGACCTGATTTGAAACGTGGAAGCTTCTCTGCTCAAGAAGCAGCCCTCATTATAGAACTCCATAGTATTCTAGGCAATAGGTGGGCTCAAATTGCCAAGCACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCTTTTCTCATGATGTTGTTCCTTCTTTATCCACATTTTCTGGCAATAGCTTTGTGGAAAGTTTCTTCCCTTTAAGTACTGAAAACCCTATCCTTAACTATCATCATCATCATAATCACCTAGACCAGTTGTACCTTCCCATCCTGCAAGGTAATTTTGATCATAATGATATCAAATTAGACATAAACAATTACAACACCAATTTCCTACACATTCAGAATCCAATGCCACAAACAGTACCATCCAATAATCCACCTTTGTTGTGTGAAGATACATGGTCACTTGGCACTGTACCTCATCATCTTAATCCATATCAAGATATTCAAATCACCAAAAGTGATGCCACAAATCAAAGTACATGGCAGCATTATGAATCAGTGGAACCCAACATTAATGTACCAAAAGTATGTGATAGCATTGAAGATTATGTTTGTAACATTCCATATAATCCATCTACCTCAAAGGAACAACATGAGACTCTTGCAAGAATCCAGTGTTATGCACCTAGTATTTGTTCACAAGATGATGAAACTCTAGATGCAACAAATCAAGTGGAGTATATTGATGCTTTAATCATGTCATCATTGCAATCAACAACAACATCTTCATCATCAATAGTCACAAACTCTATCATTCCTTCAAGCTTGGAGTACTCTTGA 1005 0.3771 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSAQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDVVPSLSTFSGNSFVESFFPLSTENPILNYHHHHNHLDQLYLPILQGNFDHNDIKLDINNYNTNFLHIQNPMPQTVPSNNPPLLCEDTWSLGTVPHHLNPYQDIQITKSDATNQSTWQHYESVEPNINVPKVCDSIEDYVCNIPYNPSTSKEQHETLARIQCYAPSICSQDDETLDATNQVEYIDALIMSSLQSTTTSSSSIVTNSIIPSSLEYS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0295 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan10g0295 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan10g0295 334 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lan10g0295 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan10g0295 334 Gene3D - 11 67 - -
Lan10g0295 334 CDD SANT 17 61 IPR001005 -
Lan10g0295 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan10g0295 334 PANTHER MYB DOMAIN PROTEIN 55 1 314 - -
Lan10g0295 334 Gene3D - 69 116 - -
Lan10g0295 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan10g0295 334 SMART sant 13 63 IPR001005 -
Lan10g0295 334 SMART sant 66 114 IPR001005 -
Lan10g0295 334 CDD SANT 69 109 IPR001005 -
Lan10g0295 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan10g0295 334 PANTHER TRANSCRIPTION FACTOR MYB26 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0295 Lan-Chr10 1926377 1928556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0295 1 118 MYB Transcription Factor Family AT3G13890 95.763 2.49e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0295 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0295 K09422 - gmx:102662609 438.343