Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0287 ATGATGGATGGTTTGATGTTCCAACAACAGTTACTAGTGGAGGAAAATATGTCTAACTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAACAAGAACTGAAATTGGTAATAGTAGTAATTACAGTCAACAACAACCATACTTAGCTCCACCACAAAGTTCTCAAGCTCAGCCTCAAGCAAAAAGAAAGAGAAACCTTCCTGGAAACCCAGACCCAGATTCTGAAGTTATAGCTTTGTCTCCAAAGACTCTTATGGCAACAAATAGGTTCATATGTGAGATCTGTAACAAGGGATTTCAAAGAGACCAAAATCTTCAACTACACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGAACAAACAAAGATATAATAAGGAAGAAGGTTTATGTGTGTCCAGAACCAAGTTGTGTGCACCATGACCCATCAAGGGCTTTGGGAGATTTAACTGGAATAAAAAAACACTTCAGTAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAATGTTCAAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATTCAAAGACATGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCATAGAGCTTTCTGTGATGCATTGGCTGAGGAGAGTGCAAGAGAAGGCATACCCAACCAACACCATTCATCACTTCTTCAACCCTCCCATCACATTAATCTCCAAACACATGATCAAGACAATAATATTCATGCCACTAATAATATTTTTCCTTTGAAAAAAGAGCAACAAAGTTTTAGCCTAATAAGTCCTCAAATAATGCCCCAATGGCTTGGCCCACAAAGTCACAACAACAACAACAACCCTCTTCATCTCTCTTCCACCTCATCAATCTTTTCCCATGATCAACAACATCATCATCAAGATCTAAGCAACCTCCATGAAACTCAAAACCCTAACCCTAGTAGTCTTGGTCCCACTCATCTTCTTCCAGCTGTGCCTGTTTCTTCCCCAAACATGTCAGCTACAGCTTTGCTTCAAAAAGCAGCTCAAATGGGTGCAACCATGAGCAAGCTTTGTTCCTCACAGTCACAACCCATTATGAGGCCCCACATGCAGCCTCACGTGACATCTTCTACCAATGGCAACAACAACAACTTTGGTTTGAACTTGTCCTCTCATCAAGATCACGTGACTACTACCACCACCAACACTGCCAGTGTTTCTCAATCATCTTTCCTTCATCATGTTATGTTTGAAGGAACTTCTTTTGAGGATGCTTTTGGAGGTATTCTCAACTCAAACAAAGATGATGCTATCATTCCAAAAACAAACAATGGTGATGATGGAGGAGGAAATGAAGCCATGACAAGAGATTTCTTGAGTCTTAGACCTCTCTCTCATAGTGATTTTTTCACCATTGCTGGCATTGGAAACTGCATGAACTCTTCTACTTCTCATGATCAACAAAACCAATCCCAAAAACCGTGGCAAGGTTAG 1515 0.4086 MMDGLMFQQQLLVEENMSNLTSASGEASASSGTRTEIGNSSNYSQQQPYLAPPQSSQAQPQAKRKRNLPGNPDPDSEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDIIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESAREGIPNQHHSSLLQPSHHINLQTHDQDNNIHATNNIFPLKKEQQSFSLISPQIMPQWLGPQSHNNNNNPLHLSSTSSIFSHDQQHHHQDLSNLHETQNPNPSSLGPTHLLPAVPVSSPNMSATALLQKAAQMGATMSKLCSSQSQPIMRPHMQPHVTSSTNGNNNNFGLNLSSHQDHVTTTTTNTASVSQSSFLHHVMFEGTSFEDAFGGILNSNKDDAIIPKTNNGDDGGGNEAMTRDFLSLRPLSHSDFFTIAGIGNCMNSSTSHDQQNQSQKPWQG* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0287 504 MobiDBLite consensus disorder prediction 22 64 - -
Lan10g0287 504 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lan10g0287 504 Gene3D Classic Zinc Finger 147 226 - -
Lan10g0287 504 SMART c2h2final6 134 164 IPR013087 -
Lan10g0287 504 SMART c2h2final6 92 114 IPR013087 -
Lan10g0287 504 SMART c2h2final6 169 189 IPR013087 -
Lan10g0287 504 MobiDBLite consensus disorder prediction 284 336 - -
Lan10g0287 504 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Lan10g0287 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Lan10g0287 504 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Lan10g0287 504 MobiDBLite consensus disorder prediction 284 306 - -
Lan10g0287 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 483 - -
Lan10g0287 504 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 19 483 - -
Lan10g0287 504 Gene3D Classic Zinc Finger 71 139 - -
Lan10g0287 504 MobiDBLite consensus disorder prediction 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0287 Lan-Chr10 1875704 1879070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0287 13 491 IDZ Gene Family AT1G55110 49.597 2.62e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0287 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0287 K25870 - qsu:111995117 561.222