Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0275 ATGGATGATCTGAGCTGGGATGCTTCACAATGTATATCTAACATACCAATCTTGTGGAACACTCATAATCAAATGCAAGAGATGCATAAGGCTCAAACAACAGATATTACAACTTCTTTTGACATAATAATGAGTATGATAATGCCAAACACAAATGTGTCAGCAACAACCATACCTGTTGAATCAGCAGCTGGAACCAGTATGGAATTAGAACCTTTTACATTTCAATCATGCCACCAGTCACTTTCAGTCAATGTGATGAACAATTATGTGCCAGATTTCAGCATGGCCCACCAACAACAACAACAACTTGATCATTGCAACTTATGGAACAACAACAACTTCAGTTATGGTAACAATGCCACTGCAGTTTCCTCTGGTGAATCTGAGAGTAATGCTTCTAGTTCTAGAGACAAAAACATGCAACAGGATGAAACAGTATCTCAAAGATCCTCAGATCAATATGTAAGTCAAGCCAAAATCATAGATTCTTATAAGGTTAATAATTCCACAAAAATGAGTAATGATATTCAGTATGATCCCTACTTCAGTATTGTTCAGAATTCTCCTGCTAATAGCACTGAAGTTGGTACTTTCAAGCTTATCTCAGAGAATCAACCAAAATGCAAGAAACCAAGGTGGGATCATAAGCATCCTTGTTTATCTACTATAAGTTTCCAGCATCAAAATTCATCATCATTGTCATCATTAAATGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTTAGGCCAGTGAACTTTTTAGGCATGGAGGTTGTGGAAAAGCCTAAGAGGAAAAATGTGAGGATATCATGTGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGACTTTGCAAAAGATTGTGCCTGGTGGAAGCAAAATGGATACTGCATCAATGCTTGATGAGGCTGCTAACTACCTCAAGTTTCTCAGGTCACAAGTGAAAGCACTAGAAACTCTAGGGAACAAGGTTGATGTAATGAATAGTTGCCCTTCTACTAGTATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAAACCCTACCCACAATACCCAACATTCCCTAAGATGA 1131 0.3846 MDDLSWDASQCISNIPILWNTHNQMQEMHKAQTTDITTSFDIIMSMIMPNTNVSATTIPVESAAGTSMELEPFTFQSCHQSLSVNVMNNYVPDFSMAHQQQQQLDHCNLWNNNNFSYGNNATAVSSGESESNASSSRDKNMQQDETVSQRSSDQYVSQAKIIDSYKVNNSTKMSNDIQYDPYFSIVQNSPANSTEVGTFKLISENQPKCKKPRWDHKHPCLSTISFQHQNSSSLSSLNEEPDPEAIAQMKEMIYRAAAFRPVNFLGMEVVEKPKRKNVRISCDPQTVAARQRRERISERIRTLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALETLGNKVDVMNSCPSTSIAFSFNPSFPMQNPTHNTQHSLR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0275 376 Gene3D - 285 348 IPR036638 GO:0046983
Lan10g0275 376 PANTHER TRANSCRIPTION FACTOR BHLH87 13 368 - -
Lan10g0275 376 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 368 IPR045843 GO:0003700|GO:0006355
Lan10g0275 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 341 IPR036638 GO:0046983
Lan10g0275 376 Coils Coil 319 339 - -
Lan10g0275 376 SMART finulus 286 335 IPR011598 GO:0046983
Lan10g0275 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Lan10g0275 376 Pfam Helix-loop-helix DNA-binding domain 290 329 IPR011598 GO:0046983
Lan10g0275 376 MobiDBLite consensus disorder prediction 121 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0275 Lan-Chr10 1770452 1772805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0275 182 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 67.368 1.38e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan10g0275 HLH 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0275 - - lang:109358246 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2123 6 31741451 31744125 Lan10g0275 10 1770452 1772805 LSH
Lan10g0275 10 1770452 1772805 Lan3g0214 3 1371066 1372792 LSH