Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0272 ATGATGGATGAGAGATCAAGAAATGAGGATTCTCCTCAGCTTTTGGATTTGATCTCAAATGAGAGGGAGTGGAACATGATCAAGGGTGAAGGAAAATGCTCTGTGGATAGGAAACTTGAACTCAAGCTTGGTCCACCTGGTGGTGAAGATTGGTGTGAAGATAAAATGAAAAACATCAACAACACTAGTACTGAAAGAGATGAGTCTCTACTCTCTCTAAGTTACTTCTCTAACAATGGTTTTCAAGATCAGAATCTTTCTACTTCTGACACTTCAGCTAAGGCTATTTTACCCTCTCCATGGTCTTCTTCAACAAGTTACCATCACCAACATCACCATCAGGGTAATAATAAAGCTTCATCATTTCTTGTGATGGGAAATAATGATGCATCCCCTAAGGTGGTAGAGTTGCAGAATGGTGCTGCTGAGAAGAAAGTATTCTCTTCTCCCTCTTCTGCTAATACAGCTGTTCCCAACACCTCTCAGAAAAGGAATGCTCCTGGTCCAGTGGTAGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCACCACTTCTAAGCCACAACCTGAGTCCTCTATGCAGCAACATGACAAGGTTGTTGGTAAGAAACCTTTAGACAACTATGGTGGTGGTGGTGGCAAAGGTTTGTTTGTAAAAATCAACATGGATGGTGTTCCAATTGGGAGAAAAGTGGACCTCAATGCTTACTATAGCTATGAAAATCTCTCCTATGCAGTTGATGAACTTTTTAGAGGCCTGCTTGCAGCTCAAAGAGATTCCTCTGGTGGTGGAGTTGACAACAAGAAAGAGGAAGAGAAAGCTATTACAGGTTTATTGGATGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCATATGTTCCTATCAACAGTGAAAAGGCTGAGGGTGTTGAAGAGTATTGACCTTTCTGCTTTTACCATTGGTAGTAAACAAGAGAAGATACCAGTTGACTCAGCAATGAAATGA 1038 0.4181 MMDERSRNEDSPQLLDLISNEREWNMIKGEGKCSVDRKLELKLGPPGGEDWCEDKMKNINNTSTERDESLLSLSYFSNNGFQDQNLSTSDTSAKAILPSPWSSSTSYHHQHHHQGNNKASSFLVMGNNDASPKVVELQNGAAEKKVFSSPSSANTAVPNTSQKRNAPGPVVGWPPIRSFRKNLASSTTSKPQPESSMQQHDKVVGKKPLDNYGGGGGKGLFVKINMDGVPIGRKVDLNAYYSYENLSYAVDELFRGLLAAQRDSSGGGVDNKKEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFLSTVKRLRVLKSIDLSAFTIGSKQEKIPVDSAMK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0272 345 MobiDBLite consensus disorder prediction 144 166 - -
Lan10g0272 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 4 336 - -
Lan10g0272 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 336 IPR003311 GO:0005634|GO:0006355
Lan10g0272 345 Gene3D - 216 334 - -
Lan10g0272 345 MobiDBLite consensus disorder prediction 100 125 - -
Lan10g0272 345 MobiDBLite consensus disorder prediction 142 209 - -
Lan10g0272 345 SUPERFAMILY CAD & PB1 domains 217 320 - -
Lan10g0272 345 MobiDBLite consensus disorder prediction 180 199 - -
Lan10g0272 345 ProSiteProfiles PB1 domain profile. 219 323 IPR000270 GO:0005515
Lan10g0272 345 Pfam AUX/IAA family 39 327 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0272 Lan-Chr10 1744920 1748730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0272 223 334 B3 DNA Binding Superfamily AT4G23980 33.036 2.02e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan10g0272 AUX_IAA 9.1e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0272 K14484 - gmx:100804593 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2120 6 31716232 31719955 Lan10g0272 10 1744920 1748730 LSH
Lan10g0272 10 1744920 1748730 Lan3g0208 3 1340501 1344184 LSH