Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0258 ATGTCTACACCATTTGAACATGATTACATAGGCTTAGCAGAGAATCCACCAATGGATGGAAACTCTAACAATATATCTTCTCTCAACTTCAAGGAAACAGAACTGAGGCTTGGTCTCCCAGGTTTCATATCTCCTGAGAGAAAATCAGGAACTGTTGTTGGGGTGTCACTTTTTGGCATTGACTTGCAGAACAAGCATAAAAATAATGTTAGTTCTGTTGTAACTCCTTTGAAGAACCATGTTGCTGGGGCAAAGAGGGGCTTCTCTGATGTTATTGATGGATCTGAGGTTGATATGGGAAAAGGGACTGTGTTGTTTTCTCCTAGAGGTGGGAATGTTGGTAAATCTCTTGTTGGTTTAGATGCTAATAATATAACCCCTAATCAAACCATCAAAGAGGTTGGTAATGTTATAGTTTCTCAATCTGTTATGGAAAAGAATAACCAGGTTTCTGGAACAAATGACCATGCTATTGCTCCTGCTGCAAAGGCACAGGTTGTAGGGTGGCCACCAATTCGATCTTTTCGAAAGAACACCATGGCTTCCAATTTGACAAAGAATAATGATGAAGCTGAAGGAAAGCCAGGATTTGGTTGTCTCTATGTGAAGGTTAGCATGGATGGAGCCCCTTATCTCAGAAAGGTTGATCTGAAAAACTACAGCAACTATATGGAACTTTCTCCAGCTCTTGAAAACATGTTCAGCTGCTTTACCATTGGCCAATGCAATTCTCATGGAGTTCCTGGTAAAGATGGATTAAGTGAGAGCTCTGTGGGGGATCTTCTCCATGGTTCTGAATATGTTTTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGTTCATTGAGTCATGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTTGCTCCAAGGGCCATGGAAAAATGTAGGAGCCAGAACTAG 960 0.4135 MSTPFEHDYIGLAENPPMDGNSNNISSLNFKETELRLGLPGFISPERKSGTVVGVSLFGIDLQNKHKNNVSSVVTPLKNHVAGAKRGFSDVIDGSEVDMGKGTVLFSPRGGNVGKSLVGLDANNITPNQTIKEVGNVIVSQSVMEKNNQVSGTNDHAIAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKNYSNYMELSPALENMFSCFTIGQCNSHGVPGKDGLSESSVGDLLHGSEYVFTYEDKDGDWMLVGDVPWEMFIESCRRLRIMKGSEAIGLAPRAMEKCRSQN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0258 319 Pfam AUX/IAA family 32 310 IPR033389 -
Lan10g0258 319 ProSiteProfiles PB1 domain profile. 199 301 IPR000270 GO:0005515
Lan10g0258 319 PANTHER AUXIN-RESPONSIVE PROTEIN 18 311 - -
Lan10g0258 319 SUPERFAMILY CAD & PB1 domains 199 300 - -
Lan10g0258 319 Gene3D - 196 312 - -
Lan10g0258 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 311 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0258 Lan-Chr10 1638185 1641272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0258 201 313 B3 DNA Binding Superfamily AT1G19850 30.435 3.64e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan10g0258 AUX_IAA 1.2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0258 K14484 - gmx:100804423 459.529