Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0238 ATGGATGACATTGAAGATGATGATACAAGGTATCCCTCTAACCCATATAGGGTTAGTCACCACCACCAAGGTTATGATTATATGAGTCGTCAGAAACTTCTTATGAATGTTTCTCCATATTCGAAGCCGGTTAAAAATGGATACGGGGAAGATAATAGTAACAATGAGGGTGAAGGTAAGGATGAGGAAGAGGAACCGGAAAAGCGATTAGGAGAGGAAGATGATGTTGATCAAAGTGGCAATATTCAGACTTTTGAAAAGGATGCCGATGACAATGAAGATGAGGAGGAAGATGATGTTGATGCAAATGGGGATGGTGATGAAAATTGTGATGACAATGGTGATGATGGTGGTGGTGGTGGTGAGGAAGATGATGATGATGACGACGATGATAATCAGAAAAGTTATTTCATGGAGATTGATGATGATTTAGAGTGCCAACCAAAAAGGCAAAAGCTGAAGAGTTTGATTTCAGCTTATGAATTTGCGCCACATGTGCCATCACCATCAGCTGTTGCTCCCTCAGCTCTTAAACCATCTTTTGGTGGTAGAAATCCACTTACTGATTGGTCTGAGCATGAAACATTCGTCCTTCTTGCTGTATGGGGTGATCGGTTTCTCCAACATGGAAGGAAGAGTCTTCGATCCGAGGAATGGCAAGAAGTTGCAGAAAAGGTATCAAAAGTTTCCAGTGTTGAAAGGACAGATACTCAGTGTAGAAACCGTCTAGATACACTGAAGAAGAAATACAAAAAGGAGAAGATTAAATTTCCAGAAACGGATGGTGGAAGTAGCAACTGGGTTTACTTTAAAAGGATGGATAAACTAATGTCTTCTCCACCACAAGTAGATCCTTCATGTGGTTTGGACTCAGGAGAGTATGTTTCTACGAACTCTAGAATTTACTCGAATCGTGCAAATGGATTGGATGAAATGAGGGATAGTCTTGGGAATACAGAATCTACTGAAGAAGCTTCAGATGGACCTCATGCAAAGAAAAGAAGAAGAGGAAGGGGTAGCGGAGAAGCTTCTTCATACAGATTACTTGCTGATTCCCTTCATAGATTCAGTAACATATATGAGAAGATTGAAAATGATAGAAGGCAACAGATGGTGGAACTAGAAAAGATGAGAGTGGATATTCAAAAGGAAATAGAAACACAGAGACGAGAGATTTTAGAACGATTGCAGAGCGAGATCTCAAAACTAGAGCAGACGGATGAAGAGAATGATGGTTCTTCCGAAAATGGTATGTGA 1257 0.4041 MDDIEDDDTRYPSNPYRVSHHHQGYDYMSRQKLLMNVSPYSKPVKNGYGEDNSNNEGEGKDEEEEPEKRLGEEDDVDQSGNIQTFEKDADDNEDEEEDDVDANGDGDENCDDNGDDGGGGGEEDDDDDDDDNQKSYFMEIDDDLECQPKRQKLKSLISAYEFAPHVPSPSAVAPSALKPSFGGRNPLTDWSEHETFVLLAVWGDRFLQHGRKSLRSEEWQEVAEKVSKVSSVERTDTQCRNRLDTLKKKYKKEKIKFPETDGGSSNWVYFKRMDKLMSSPPQVDPSCGLDSGEYVSTNSRIYSNRANGLDEMRDSLGNTESTEEASDGPHAKKRRRGRGSGEASSYRLLADSLHRFSNIYEKIENDRRQQMVELEKMRVDIQKEIETQRREILERLQSEISKLEQTDEENDGSSENGM* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0238 418 MobiDBLite consensus disorder prediction 88 136 - -
Lan10g0238 418 MobiDBLite consensus disorder prediction 399 418 - -
Lan10g0238 418 MobiDBLite consensus disorder prediction 62 87 - -
Lan10g0238 418 Pfam Myb/SANT-like DNA-binding domain 189 276 IPR044822 -
Lan10g0238 418 MobiDBLite consensus disorder prediction 316 331 - -
Lan10g0238 418 MobiDBLite consensus disorder prediction 1 24 - -
Lan10g0238 418 MobiDBLite consensus disorder prediction 36 147 - -
Lan10g0238 418 Gene3D - 190 252 - -
Lan10g0238 418 Coils Coil 360 409 - -
Lan10g0238 418 PANTHER OS01G0718900 PROTEIN 74 416 - -
Lan10g0238 418 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 74 416 IPR044823 -
Lan10g0238 418 MobiDBLite consensus disorder prediction 305 344 - -
Lan10g0238 418 ProSiteProfiles Myb-like domain profile. 190 247 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0238 Lan-Chr10 1517071 1519024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0238 339 416 Trihelix Transcription Factor Family AT3G14180 38.462 4.92e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan10g0238 Myb_DNA-bind_4 5.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0238 - - lang:109342851 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2090 6 31506617 31508558 Lan10g0238 10 1517071 1519024 LSH
Lan10g0238 10 1517071 1519024 Lan3g0177 3 1148908 1150882 LSH