Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0227 ATGTCGCCGGAAAGTAGCACCTACTCATCGGAATCTGACGCCGTCGACTTTAACTTAAAGGAGACTGAACTCACTCTGGGCCCTCCCGGTATCAAAACCGGCAACAAACGTAGCTTCTTCGACACCGTTGATCTTCATCTTGCCACCCCAACCCATAATAATTCTGCAAATTCTAGCAATAACTTCTTATGCTCCACCACAAAATCCCAAACACCCAATGAAGAAGTGGTGGGGTGGCCACCAGTGAGAGCGAGCAGAAAGAATGCAATGAAGAGTTGCAAGTACGTGAAGGTGGCCATGGATGGAGCACCATATCTTAGAAAAGTGGATCTTGAAATGTATAAGAGTTATGACCAGCTTCTGAGAGCATTAGAGACCATGTTTTCTTGCTTAACAATTCGTAATGGATTGAATGAGAAGAAAGTGATGGACATAGGAAATGGGATTGAATACATGCCCACTTATGAAGACATAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGACTAATGATAAGCTCAGAAACCATTGGCTTAGGTACGATGAGTGGTTCAAAATGTAAGGGGGCTCAAGTAAAAAGAATAAATGGTACAATGATAAGTTGTTAA 645 0.4264 MSPESSTYSSESDAVDFNLKETELTLGPPGIKTGNKRSFFDTVDLHLATPTHNNSANSSNNFLCSTTKSQTPNEEVVGWPPVRASRKNAMKSCKYVKVAMDGAPYLRKVDLEMYKSYDQLLRALETMFSCLTIRNGLNEKKVMDIGNGIEYMPTYEDIDGDWMLVGDVPWKMFVESCKRIRLMISSETIGLGTMSGSKCKGAQVKRINGTMISC* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0227 214 ProSiteProfiles PB1 domain profile. 93 187 IPR000270 GO:0005515
Lan10g0227 214 Gene3D - 87 198 - -
Lan10g0227 214 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 188 IPR003311 GO:0005634|GO:0006355
Lan10g0227 214 Pfam AUX/IAA family 23 192 IPR033389 -
Lan10g0227 214 PANTHER AUXIN-RESPONSIVE PROTEIN 11 188 - -
Lan10g0227 214 SUPERFAMILY CAD & PB1 domains 85 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0227 Lan-Chr10 1440808 1442542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0227 48 187 B3 DNA Binding Superfamily AT2G46530 34.043 4.32e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan10g0227 AUX_IAA 1.3e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0227 K14484 - qsu:112027116 249.98