Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0190 ATGAGTAGTAGTTGGAGTTATGGCACTGCGATTCAAGCACTTTCTTCAGAAGAAGATCTCAGTGAATCGTTTTCAACATCATCCCTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAAACTCGTGGTCTCATGCATCTTTTTCGCCACGATTCTAACTCTTCCCTATCATCTTCAAATCCTTCTCCTCTTCCAGTTGGACGGAAACCACTTGTTTGTGTTCTTGGAGTTCCAAATCACATGACTTATGCTGATTTCTGCCAGTTTTCTGGTTCCTTTATTCATCATATCCTTGAGATGCGCATTGTTAGAATGGATGGGGTGGAGGATCAGTACAGTGTTTTAATAAGGTTTGATGACCAAGACTCCACAGACAGCTTCTATAAGCATTACAATGGCCGCCACTTCTCATCTCTGGAGGTGGAGGTTTGCCGAGTTCTCTTCACAATAGATGTACAGTACACTGGCTCAATTGAACATGCTCAGCCATCTAACAGTAGTTCAAATGAACAGCCTACATGTCCTGTCTGCCTCGAGCGATTGGATCAAGACACAAGTGGAATTCTTACAACTATATGCAATCATTCTTTCCACTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAACAAGCAGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAAAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGGTGTGGAAGATATAAAGAAGGGCATGCCATAATACATTGGAAAGAGACACAGCATTGCTACTCCCTTGAAGTGGAAACCAAACGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAATTCTCACTGTGTGCATGCTGACAATGGGTGTGGAAGCTGCAGCTGTGAAGATAATGCCATGAGCGAGGCTATACTTAACAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTAGTCAACTTGAAAGCCAAAAATTACTTAATGAGAACCTTTTGAAAAATGAGGAGATTTGGAAAGCAAAGTTACTTGAGATTGAAGAGAGGGAAAGAAAAGCTTTAAAACTGACGGATGGTAGAGTAGTGGGCCTGGAAGAGCAGCTTAGAGATTTAATGGCTTGTCTTGAGGGTGCTAAGAATGTAGAAATGCTGCAGGGGGCAAATGAAATTAAAGATGTGATTGTCTTTGACACACCAAGAGAATCCTAA 1269 0.4106 MSSSWSYGTAIQALSSEEDLSESFSTSSLNFSSGNPRIEETRGLMHLFRHDSNSSLSSSNPSPLPVGRKPLVCVLGVPNHMTYADFCQFSGSFIHHILEMRIVRMDGVEDQYSVLIRFDDQDSTDSFYKHYNGRHFSSLEVEVCRVLFTIDVQYTGSIEHAQPSNSSSNEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKEGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLASQLESQKLLNENLLKNEEIWKAKLLEIEERERKALKLTDGRVVGLEEQLRDLMACLEGAKNVEMLQGANEIKDVIVFDTPRES* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0190 422 SMART ring_2 174 213 IPR001841 -
Lan10g0190 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 289 IPR013083 -
Lan10g0190 422 PANTHER BRCA1-ASSOCIATED PROTEIN 16 346 - -
Lan10g0190 422 PANTHER BRCA1-ASSOCIATED PROTEIN 347 416 - -
Lan10g0190 422 SMART Zf_UBP_1 224 273 IPR001607 GO:0008270
Lan10g0190 422 Pfam Ring finger domain 173 214 IPR001841 -
Lan10g0190 422 SUPERFAMILY RING/U-box 190 289 - -
Lan10g0190 422 Pfam Zn-finger in ubiquitin-hydrolases and other protein 225 284 IPR001607 GO:0008270
Lan10g0190 422 ProSiteProfiles Zinc finger RING-type profile. 174 214 IPR001841 -
Lan10g0190 422 Coils Coil 349 369 - -
Lan10g0190 422 ProSiteProfiles Zinc finger UBP-type profile. 208 301 IPR001607 GO:0008270
Lan10g0190 422 Pfam BRCA1-associated protein 2 65 161 IPR011422 -
Lan10g0190 422 CDD RING-H2_BRAP2 172 215 - -
Lan10g0190 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 209 IPR013083 -
Lan10g0190 422 CDD RRM_BRAP2_like 72 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0190 Lan-Chr10 1200081 1204025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0190 170 214 C3H Transcription Factor Family AT1G72220 48.936 2.22e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0190 K10632 - gmx:100794688 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0190 10 1200081 1204025 Lan3g0129 3 880389 885375 LSH