Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0174 ATGTACAGCAATTTCAAGGAACAAGCAATCGAATACGTGAAGCAAGCCGTAGAAGAAGACAATGCTGGAAACTACGCAAAAGCTTTCCCTCTCTACATGAATGCTTTGGAGTATTTCAGAACTCATCTCAAGTATGAAAAAAACTTTAAGATCAGGGAAGCTATCATGGTGAAGTTCACCGAGTATCTTCGCCGTGCCGAGGAGATCCGTGCTGTCCTCGATGAAGGTGGGCCCGCACCTTCCTCTAATGGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGCGATGGGGAGGATCCGGAACAAGCGAAGCTTCGGGCGGGGTTGAATTCGGCGATCATAAGGGAGAAACCGAATGTGAATTGGAATAATGTTGCTGGATTGGAGAGTGCTAAGCAGGCTTTGCAAGAGGCTGTTATTTTGCCTGTGAGAGCATTTTTGTTGTATGGACCTCCTGGAACAGGGAAATCATATTTGGTCAAGGCTGTTGCAACAGAAGCTGACTCCACGTTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCCCGAGACAATGCCCCTTCTATCATATTTATTGATGAAATAGATTTCCTATGTGGACAGCGTGGAGAAGGCAATGAGAGTGAGGCTTCAAGACGAATTAAAACAGAACTTCTGGTTCAGATGCAGGGGGTTGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCCACAAATACACCCTATGCTTTGGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATATATCCCACTACCAGATTTGAAGGCTCGTCAACACATGTTCAAGGTGCATCTAGGAGATACTCCTCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTAGCAAGACAGAGGGGTTTTCTGGTTCAGATCTATCTGTTTGTGTGAAGGATGTCTTATTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTCTTTAAGAGTTCCGAGGGTATGTGGATCCCGTGTGAACCAAAGCAACAGGGTGCAGTCCAAATCACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCTAAGATCCTTCCACCCCCTATTACAAGAACTGATTTTGACAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAGGTGACCTTGAGGTTCATGAGAGATTCACAAAAGAGTTTGGAGAGGAAGGTTAA 1239 0.4504 MYSNFKEQAIEYVKQAVEEDNAGNYAKAFPLYMNALEYFRTHLKYEKNFKIREAIMVKFTEYLRRAEEIRAVLDEGGPAPSSNGGGGGGGGGGGDGEDPEQAKLRAGLNSAIIREKPNVNWNNVAGLESAKQALQEAVILPVRAFLLYGPPGTGKSYLVKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDFLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLASKTEGFSGSDLSVCVKDVLFEPVRKTQDAMFFFKSSEGMWIPCEPKQQGAVQITMQELAAKGLASKILPPPITRTDFDKVLARQRPTVSKGDLEVHERFTKEFGEEG* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0174 412 SMART AAA_5 141 277 IPR003593 -
Lan10g0174 412 SUPERFAMILY MIT domain 2 88 IPR036181 -
Lan10g0174 412 MobiDBLite consensus disorder prediction 74 101 - -
Lan10g0174 412 SMART smart 2 80 IPR007330 -
Lan10g0174 412 Pfam Vps4 C terminal oligomerisation domain 345 409 IPR015415 -
Lan10g0174 412 Gene3D - 277 392 - -
Lan10g0174 412 Gene3D - 117 400 IPR027417 -
Lan10g0174 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 408 IPR027417 -
Lan10g0174 412 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 412 - -
Lan10g0174 412 Gene3D - 6 75 - -
Lan10g0174 412 CDD AAA 125 275 - -
Lan10g0174 412 PANTHER AAA DOMAIN-CONTAINING 1 412 - -
Lan10g0174 412 CDD MIT_VPS4 4 77 IPR045253 -
Lan10g0174 412 Pfam ATPase family associated with various cellular activities (AAA) 146 275 IPR003959 GO:0005524|GO:0016887
Lan10g0174 412 ProSitePatterns AAA-protein family signature. 247 266 IPR003960 GO:0005524|GO:0016887
Lan10g0174 412 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0174 Lan-Chr10 1119581 1122120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0174 141 349 Calmodulin-binding Proteins AT3G56690 35.545 3.51e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0174 K12196 - gmx:100788150 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2080 6 31419598 31423479 Lan10g0174 10 1119581 1122120 LSH
Lan10g0174 10 1119581 1122120 Lan3g0164 3 1056462 1060149 LSH
Lan10g0174 10 1119581 1122120 Lan8g1607 8 23038369 23043003 PCT
Lan10g0174 10 1119581 1122120 Lan13g0427 13 3069563 3074973 PCT
Lan8g1607 8 23038369 23043003 Lan10g0174 10 1119581 1122120 PCT
Lan13g0427 13 3069563 3074973 Lan10g0174 10 1119581 1122120 PCT