Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0171 ATGGCGGAACACGAGAACAGTGCCAAAGCAATCGAAGATGAACCTGTTATCGGGCCAGGTCCAGCCCCTCGTAACCGACTCAAACGACCGCTCCAATTCGAACAAGCTTACCTCGATACCTTACCCTCTGCTAACATGTATGAGAAGAGTTATATGCATCGTGATGTGGTTACGCATGTTGCTGTTTCAGCTGCTGATTTTTTCATCACTGGAAGCATTGATGGGCATTTGAAGTTTTGGAAGAAAAGGCCTATCGGTATTGAGTTTGCCAAACACTTCAAAGCTCATCTTGGTCCAATTGAAGGTTTAGCTGTTAGTGGTGATGGCCTGCTTTGCTCTACAATATCCGATGACCGTTCTGTGAAAGTATATGATGTAGTCAACTTTGATATGATGGTGATGATCCGCTTGCCATATATCGCTGGCGCTGTTGAGTGGGTATACAAACAAGGGGATGTCAAAGCTATGCTTGCTGTTAGTGACCGGAACTCATCTTTTGTGCACATATATGATGTACGAGCTGGTTCAAATGATCCTATCATCTCCAAAGAGATACATTTGGGTCCTATTAAAGTTATGAAGTACAATCCCATATATGATTCTGTAATTTCAGCAGATGTAAAGGGTATAATTGAATACTGGAGCCCTGCTACTCTTCAATTTCCGGAGGATGAGGTCAGCTTTAAACTGAAAACTGATACTAACCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCAGCCATTGAGGTCAGCCCAGATGGTAAACAATTTTCAATCACATCACCTGACCGTAGGATACGTGTGTTTTGGTTCAGAACAGGTAAACTAAGGCGAGTTTATGATGAGTCTCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGACGCTCCATTGTATCGGTTGGAGGCCATTGATTTTGGCCGAAGAATGGCTGTCGAGAAGGAAATAGAGAAGACTGAAGATGCTCCACTTCCGAATGCAGTTTTTGATGAAAGTTCCAATTTTATTATCTATGCAACCTTGCTTGGGATCAAAATTGTTAATATGCACACAAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAACAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGACCGAAATAGTAAAAAAGTAAGAAAGATTCCTGCTGCTGCTGCTAATGCCAATGAGAGTAAGGAGCCTTTGACAGACCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTGTTCAGTCGGAGAGAACCAGAGGAGCCTGAAGATGCAACTAAGGGAAGAGACGTGTTCAATGAAAAGCCTCCTGCTGATGAGCTTTTGTCAGTTTCAGATATTGGAAAGGCAGCTACAACATCACTCCCGGACAATGTGATTTTACACACAACTATGGGTGATGTTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTTACAACTCATTGCCGGAATGGCTATTATGACAATCTTATTTTTCACCGGGTCATCAAAGGTTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGTCAATCTATTTGGGGAAGGGAATTTGAGGATGAATTTCATAAAAGTTTAAGGCATGATAGGCCTTTCACAGTGTCAATGGCAAATGCTGGCCAAAATTCAAATGGCTCTCAGTTCTTTATCACCACTGTGGCTACTCCATGGTTGGACAATAAGCACACAGTATTTGGGAGAGTTGTGAAGGGAATGGATGTTGTTCAGGGCATAGAAAAGGTGAAGACAGACAAAACAGACAAGCCATACCAAGATGTAAAAATCCTAAATGTCACAGTACCAAAGTCTTGA 1848 0.4172 MAEHENSAKAIEDEPVIGPGPAPRNRLKRPLQFEQAYLDTLPSANMYEKSYMHRDVVTHVAVSAADFFITGSIDGHLKFWKKRPIGIEFAKHFKAHLGPIEGLAVSGDGLLCSTISDDRSVKVYDVVNFDMMVMIRLPYIAGAVEWVYKQGDVKAMLAVSDRNSSFVHIYDVRAGSNDPIISKEIHLGPIKVMKYNPIYDSVISADVKGIIEYWSPATLQFPEDEVSFKLKTDTNLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTEDAPLPNAVFDESSNFIIYATLLGIKIVNMHTNKVARILGKVENNDRFLRIALYQGDRNSKKVRKIPAAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLSVSDIGKAATTSLPDNVILHTTMGDVHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGQNSNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0171 615 SMART WD40_4 86 125 IPR001680 GO:0005515
Lan10g0171 615 SMART WD40_4 44 81 IPR001680 GO:0005515
Lan10g0171 615 SMART WD40_4 176 215 IPR001680 GO:0005515
Lan10g0171 615 SMART WD40_4 232 271 IPR001680 GO:0005515
Lan10g0171 615 Gene3D - 443 613 IPR029000 -
Lan10g0171 615 Gene3D - 35 137 IPR015943 GO:0005515
Lan10g0171 615 Gene3D - 157 438 IPR015943 GO:0005515
Lan10g0171 615 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 7 613 - -
Lan10g0171 615 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 462 612 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 475 490 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 501 513 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 544 559 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 559 571 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 572 587 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 MobiDBLite consensus disorder prediction 1 26 - -
Lan10g0171 615 CDD cyclophilin_WD40 463 610 - -
Lan10g0171 615 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 7 613 IPR044666 -
Lan10g0171 615 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Lan10g0171 615 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 458 612 IPR002130 GO:0000413|GO:0003755
Lan10g0171 615 SUPERFAMILY Cyclophilin-like 459 612 IPR029000 -
Lan10g0171 615 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 496 513 IPR020892 GO:0003755|GO:0006457
Lan10g0171 615 SUPERFAMILY WD40 repeat-like 44 359 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0171 Lan-Chr10 1106504 1112168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0171 462 612 U-box Gene Family AT5G67530 45.695 1.09e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0171 K12736 - gmx:100792207 1165.98