Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0163 ATGGAGTTTTGGGGTACTGAGGTTAAGGTTGGTGAGGTTGTTAAGGTGGACCCAGAAGAAATTGAGGCATATGTGCATCTTTCTCAGGCTGCTCTTGGTGAGTCAAAGAAAGACAAAGCAAATGAACCTGTGGTTCTTCACTTGAAAGTTGGTGAACAGAAAATTGTTTTGGGAACTCTTTCCAGGGATAAAATCCCTCAGACAACCCTGGAAGTTGTTCTGGACAAGGAGTTTGAGCTTTCCCACAGTTCAAAGAGTTCTAGCGTCTTTTTCTGTGGATACAAGGCACTTATTCCCGATGAGGAAGATAGTGATGAGGATGACTTTGATTCCGATGAGGATATTCCATTGCCTGTGAAGGAAAATGGAAAATCTGTAATCAAAGCTGAAGACGCTAAGGTTTCTGAACCTAAAAAGGCTAATGCTAAGGGTGGTGCCCCAGCTAAACAGGTCAAGATTGCTGATCCCAAGAAAGAAGATGACGAGGAGGATGATGATTCCGATGACGATGATGATTTTGGAAGTTCCGACGATGAGGTGGATGATGTTGATAGTGATAGTGACGATGAAGGTGATAGTGAAGATGATGAAGAGACCCCTACCAAGAAGGTGGTACCTGGAAAGAAGAGGGCCAATGATTCTGCATCAAAAACTCCAGTTTCTAACAAGAAAGCTAAAAATGCCACCCCTGAAAAGACTGATGGTAAGAAAGGTGGGCATACAGATACTCCTCACCCTGCAAAGAAGGCTGGAAAGACTCCCAAAAGTGATGGCAAGGCTCAGACCCCTAAGTCTGCCGGACAGTTCAGTTGCGGTAGCTGTCAGAAGGCTTTCAACTCCGAAGGTGGTCTGCAACAACATAACAAAGCTAAGCATGACAAGTGA 885 0.4452 MEFWGTEVKVGEVVKVDPEEIEAYVHLSQAALGESKKDKANEPVVLHLKVGEQKIVLGTLSRDKIPQTTLEVVLDKEFELSHSSKSSSVFFCGYKALIPDEEDSDEDDFDSDEDIPLPVKENGKSVIKAEDAKVSEPKKANAKGGAPAKQVKIADPKKEDDEEDDDSDDDDDFGSSDDEVDDVDSDSDDEGDSEDDEETPTKKVVPGKKRANDSASKTPVSNKKAKNATPEKTDGKKGGHTDTPHPAKKAGKTPKSDGKAQTPKSAGQFSCGSCQKAFNSEGGLQQHNKAKHDK* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0163 294 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
Lan10g0163 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 294 IPR013087 -
Lan10g0163 294 MobiDBLite consensus disorder prediction 115 138 - -
Lan10g0163 294 MobiDBLite consensus disorder prediction 227 255 - -
Lan10g0163 294 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 290 - -
Lan10g0163 294 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Lan10g0163 294 MobiDBLite consensus disorder prediction 100 114 - -
Lan10g0163 294 Gene3D Nucleoplasmin core domain 1 99 - -
Lan10g0163 294 MobiDBLite consensus disorder prediction 100 294 - -
Lan10g0163 294 MobiDBLite consensus disorder prediction 159 196 - -
Lan10g0163 294 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 290 - -
Lan10g0163 294 MobiDBLite consensus disorder prediction 258 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0163 Lan-Chr10 1065766 1068531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0163 1 95 C2H2 Transcription Factor Family AT3G44750 57.895 9.12e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0163 NPL 2.9e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0163 - - lang:109358867 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2032 6 31074413 31077149 Lan10g0163 10 1065766 1068531 LSH
Lan10g0163 10 1065766 1068531 Lan3g0116 3 807707 811695 LSH
Lan10g0163 10 1065766 1068531 Lan7g0343 7 2352254 2355423 PCT
Lan10g0163 10 1065766 1068531 Lan8g1623 8 23199974 23202386 PCT
Lan7g0343 7 2352254 2355423 Lan10g0163 10 1065766 1068531 PCT
Lan8g1623 8 23199974 23202386 Lan10g0163 10 1065766 1068531 PCT