Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0161 ATGGCGAACAAGGTAACAGAGCAGCACTTATCCACCGTCCGATCCATCGTGGGTCCCGATTTCACCGACATGGACATCATCAGAGCCCTTCACATGGCCAAAAATGACGTCACCGCTGCCATCAATATCATTTTCGATACTCACACCCCAACCACTACCACCCCCAAATTCAAATCCAACAATAACAACCAATCACATCATCAAGAACATGCTGAACATGCAAAAGTTTCTCCTTTAAAATCAACCATTCACTCTCACACTGTCACCGCCGCTAGCTCCAAAGAAAACGACAATAAATCTTATGATGCTTGTTCCGATAATTGGTGGTTTGTTGGTTATGGCGAAATGATGGGACTTTCAACTTGTAAAGGGAGGAGTGTAAAGTATGGTGATCCAGTATGTTTTAACTTTCCAACAAAGTCTAATCTCTCTGCTTCCACGCCAACAGGTAAAGGCTTCGGCCGAAGCCGACAGGCCGCGGCAAGTTGTTCTGAGATAGTTAGGTTCTCCACAGAACAATCTGGAGAGATAGGTAGAATACCAAATGAATGGGCTCGATGTCTCTTGCCACTCGTACGGGATAATAAGGTTAAGATTGAGGGGAATTGTAAATTTGCACCCAATGTTTTAGGCATCATGGACACCATTGTTTTGTCAGTCAGTGTATTCATCAATAGATCATTGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTACCAATTCCACCGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTCGTTTGCTAGGCCTAAACCCTTTTAAGAAGGCAGAGTTAACTCCTACTGATTTTTATTCCAACAAGCGTCCTTTCGATCAGAAGGTTACATTACGAAACACCAAGCCTGAGCATCCTTCTCAAAATAATAATGAGAATGATAATGAGGATTCCATTTCTGAAATTGAGTTTGACAATATTGTTGGTGTTGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCAGGCAATCTTCTGTGTGAACTGCGGCCTTATCAAAAGCAGGCTCTTTATTGGATGATTCAATTGGAGAAGGGAAGACATACAGATGAGACAACCGAAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGAGAGCTTACTATTTATCTGAATGCATTTTCTGGTGATGCCACAATCAAATTTCCTAGCACCCTTGAAATGGCCAAAGGAGGGATATTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCCTTGCTCATTCAGGAAGAGGTGGATCAATAGGCAGTCAAACCACAGTGCAGTCCTTTATTGAAGGTGGTGAAGTTAATGATACAGGGCACAAGTTTTCAGAAGTACCAAAGAAGAAAACCAAATTTCCTGGTTTTGATAAATTGATGAAGCAAAACAATGCTCTAACAAGTGGTGGTAACTTGATAATATGTCCCATGACCCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGCCAAGCCTGGGTGTCTGTCTATATATGTTCATTATGGGCAAAGTAGGCCAAAAGATGCAAAAAGTCTAGCTCAAAGTGATGTTGTAATTACCACATATGGAGTTTTATCCTCCGAATTTTCCAGTGAGAGTGCGGAGGATAATGGTGGACTTTTCTCAATTAGGTGGTTTAGGGTGGTTCTTGATGAGGCACACACTATAAAATCTTCTAAAAGCCAAGTTTCAATGGCTGCTGCAGCTCTAAATGCTGACCGACGTTGGTGTCTTACTGGCACTCCTATTCAGAACAGCCTCGAGGATCTTTTCAGTCTTCTTCGGTTTCTGAGAGTAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGGTTGAAGCTAGTTCAGTCAATTTTGAAGCCAATCATGTTGAGAAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTTCCTCCAGCTGATATGCAGATAATCTACTGTGAACCAACAGAAGCTGAAAAGGACTTTTATGAGGCCCTATTCAAAAGATCCAAGGTCAAGTTTGACCATTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTGAACAAACTAGCCAAGCGCTTCCTTAGAGGAACCTATAATGCTTTAGACGGTGAAGTAAAAGATGCACCTTCATGTGCTTATGTTCAAGAAGTTGTCGAAGAGCTCCGTAAGGGGGAACAAGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGCTTATGCCGAGAATGCTTATTGGCAAGTTGGCGAAATGTTACTTCTGGTTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGATAGTCGATTTAAGGTTGATATTGAAAAGAACTGGGTAGAGTCATGCAAGGTAACCATTCTTTTGCATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAGAGCATTGTCTTCAGTCAGTGGACTGCGTTTCTAGACCTCTTGCAAATCCCCTTTACTAGGAATAACATTTCATATGTTCGTCTTGATGGGACTTTGAATCTGCAACAGCGGGAAAAAGTAATAAAACAATTCTCAGAAGACAGCAGCACCCTGGTGTTGTTGATGTCATTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCAGCTTCAAATGCTTTCGTCATGGACCCCTGGTGGAATCCGGCTGTTGAGGAACAGGCTGTTATGCGAATCCATCGCATTGGACAAACAAAAAAGGTGGCCATCAAACGGTTTATTGTGAAGGGTACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAAAGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACAGCTCGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3063 0.4287 MANKVTEQHLSTVRSIVGPDFTDMDIIRALHMAKNDVTAAINIIFDTHTPTTTTPKFKSNNNNQSHHQEHAEHAKVSPLKSTIHSHTVTAASSKENDNKSYDACSDNWWFVGYGEMMGLSTCKGRSVKYGDPVCFNFPTKSNLSASTPTGKGFGRSRQAAASCSEIVRFSTEQSGEIGRIPNEWARCLLPLVRDNKVKIEGNCKFAPNVLGIMDTIVLSVSVFINRSLFGKHHQVSLKDATNSTDESVFHPLPTLFRLLGLNPFKKAELTPTDFYSNKRPFDQKVTLRNTKPEHPSQNNNENDNEDSISEIEFDNIVGVGSNSELEEMDPPGNLLCELRPYQKQALYWMIQLEKGRHTDETTETLHPCWEAYRLADKRELTIYLNAFSGDATIKFPSTLEMAKGGILADAMGLGKTIMTISLLLAHSGRGGSIGSQTTVQSFIEGGEVNDTGHKFSEVPKKKTKFPGFDKLMKQNNALTSGGNLIICPMTLLGQWKAEIETHAKPGCLSIYVHYGQSRPKDAKSLAQSDVVITTYGVLSSEFSSESAEDNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALNADRRWCLTGTPIQNSLEDLFSLLRFLRVEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDHFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNALDGEVKDAPSCAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNVTSGLCPVCRKTISRQDLITAPTDSRFKVDIEKNWVESCKVTILLHELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISYVRLDGTLNLQQREKVIKQFSEDSSTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0161 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 651 IPR027417 -
Lan10g0161 1020 MobiDBLite consensus disorder prediction 290 304 - -
Lan10g0161 1020 CDD SF2_C_SNF 851 978 - -
Lan10g0161 1020 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 115 1020 - -
Lan10g0161 1020 CDD DEXDc_SHPRH-like 338 651 - -
Lan10g0161 1020 Gene3D - 395 663 IPR038718 -
Lan10g0161 1020 SUPERFAMILY RING/U-box 774 831 - -
Lan10g0161 1020 MobiDBLite consensus disorder prediction 63 79 - -
Lan10g0161 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 1009 IPR027417 -
Lan10g0161 1020 Gene3D - 667 1020 IPR027417 -
Lan10g0161 1020 ProSiteProfiles Zinc finger RING-type profile. 785 825 IPR001841 -
Lan10g0161 1020 Pfam SNF2-related domain 341 729 IPR000330 GO:0005524|GO:0140658
Lan10g0161 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 855 1020 IPR001650 -
Lan10g0161 1020 Pfam Zinc finger, C3HC4 type (RING finger) 782 830 - -
Lan10g0161 1020 MobiDBLite consensus disorder prediction 288 308 - -
Lan10g0161 1020 MobiDBLite consensus disorder prediction 59 79 - -
Lan10g0161 1020 Pfam HIRAN domain 115 220 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan10g0161 1020 SMART ultradead3 334 635 IPR014001 -
Lan10g0161 1020 ProSitePatterns Zinc finger RING-type signature. 800 809 IPR017907 -
Lan10g0161 1020 PANTHER DNA REPAIR PROTEIN RAD5 115 1020 - -
Lan10g0161 1020 SMART helicmild6 884 967 IPR001650 -
Lan10g0161 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 847 IPR013083 -
Lan10g0161 1020 SMART HIRAN_2 111 224 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan10g0161 1020 CDD RING-HC 785 824 - -
Lan10g0161 1020 SMART ring_2 785 824 IPR001841 -
Lan10g0161 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 613 IPR014001 -
Lan10g0161 1020 Pfam Helicase conserved C-terminal domain 855 967 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0161 Lan-Chr10 1048513 1058096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0161 1 1020 RAD5 or RAD16-like Gene Family AT5G22750 70.378 0.0 1488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan10g0161 SNF2_N 8.4e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0161 K15505 - gmx:100794558 1696.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1876 6 29841425 29847487 Lan10g0161 10 1048513 1058096 LSH