Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0157 ATGGCGGAGGACCAAAATGAAGGGAGTGATTACAGTTCAGAAGAGGAAGGAACTGAGGATTATAGGCGTGGAGGTTACCATGCGGTTCAGATTGGTGATACTTACAAGAATGGTTGCTATGTGGTGCAGAGCAAATTAGGTTGGGGTCATTTTTCTACTGTGTGGCTCGCTTGGGATACTCAGAATTCGCGGTATGTTGCCCTAAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCAATGGATGAAATAAAGATTCTTAAGCAGATTGCGGAGGGGGATCTTGATGACAAGAAATGTGTTGTCAAGCTATTGGATCACTTTAAGCATTCAGGCCCTAATGGCCAGCATGTGTGTATGGTTTTTGAATTCCTAGGTGACAATCTTCTTACCCTTATAAAGTACAGTGATTATCGAGGGGTTCCCCTTCCCATGGTTAAAGAAATTTGTTTCCATATTTTGGCTGGTTTGGATTACTTGCATCGCGAACTCTCGATAATACACACTGATTTGAAGCCAGAGAATGTCCTGCTTCTGTCTCCAATAGATCCGTGCAAGGATCCAAGAAAAACAGGTGCTCCACTTGTCCTTCCAAACACCAAGGATAAGATTGTGACCACAAAAGATGATAAAAGTTTGAATGGAGATCTGACCGAGAACCCGAAAAAGAAAATACAGAAAAAGGCTAAAAAGGCAGCTCAAGGCTGTGTTGTGAAGGAAAGTCCCGAGGAAGCTGAGGAGAATTCTGAAGAACCTGAGCAAGATGGTTGTAGTAATGATGTGGATCCAAGTGTTGAATCTGGTGAAGGTAAACCTAGTAGTCCTGTGACTGTGAGTGAAGATGAACGAACAAAGGTTTCTGAAGCTAAGGGTATTCCACAAGGAAGTCGTGGGAAAGTTAGCAGTTCTACAAGAAAAAATTTGCTGGCAGCTGTTGATTTCAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACGAGACAGTATCGGTGTCCCGAGGTTATTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGTCACTGGCGATGTGCTTTTTGATCCTCACAGCGGTGACAATTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCCCGGGAGTTTTTCAGCAGATCTGGTGATTTGAGGCACATCCGTCAGTTGCATTTCTGGCCTGTTAATAAGGTGCTGATGGAGAAGTATGATTTCACTGAGCAAGAAGCAAATAATATGGCTGATTTCCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAGTCATCCATGGTTCAGTGCAGGTCCTCGGACACTTCAACCCTCGTTGACTGCTGTGCAATCTGATGCTATGGATGTAGAAATGTCTGAAAATATAAAGAGGGAAAAGGGTGAGCATGAGGCTGTGGAAGTTGGTGTGGGGAACATAGCCATTATTGGATCTCCAAAGTCACTGAAAGAGTCCCAACCAATAAAGTCATCAAAATAG 1623 0.4325 MAEDQNEGSDYSSEEEGTEDYRRGGYHAVQIGDTYKNGCYVVQSKLGWGHFSTVWLAWDTQNSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILAGLDYLHRELSIIHTDLKPENVLLLSPIDPCKDPRKTGAPLVLPNTKDKIVTTKDDKSLNGDLTENPKKKIQKKAKKAAQGCVVKESPEEAEENSEEPEQDGCSNDVDPSVESGEGKPSSPVTVSEDERTKVSEAKGIPQGSRGKVSSSTRKNLLAAVDFKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFSRSGDLRHIRQLHFWPVNKVLMEKYDFTEQEANNMADFLVPLLDFVPEKRPTAAQCLSHPWFSAGPRTLQPSLTAVQSDAMDVEMSENIKREKGEHEAVEVGVGNIAIIGSPKSLKESQPIKSSK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0157 540 Gene3D Transferase(Phosphotransferase) domain 1 123 478 - -
Lan10g0157 540 SUPERFAMILY Protein kinase-like (PK-like) 35 487 IPR011009 -
Lan10g0157 540 CDD STKc_SRPK 29 477 - -
Lan10g0157 540 MobiDBLite consensus disorder prediction 207 302 - -
Lan10g0157 540 PANTHER SERINE KINASE-LIKE PROTEIN 8 538 - -
Lan10g0157 540 MobiDBLite consensus disorder prediction 1 22 - -
Lan10g0157 540 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 538 - -
Lan10g0157 540 Pfam Protein kinase domain 307 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0157 540 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0157 540 ProSiteProfiles Protein kinase domain profile. 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0157 540 SMART serkin_6 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0157 540 MobiDBLite consensus disorder prediction 207 224 - -
Lan10g0157 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lan10g0157 540 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Lan10g0157 540 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0157 Lan-Chr10 1020938 1024260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0157 1 540 EF-hand Containing Proteins AT5G22840 64.727 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lan10g0157 Pkinase 4.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0157 K08832 - gmx:100791829 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2029 6 31029009 31033574 Lan10g0157 10 1020938 1024260 LSH
Lan10g0157 10 1020938 1024260 Lan3g0105 3 739114 743750 LSH