Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0154 ATGATTTCAAGGGCCACATCAAGCTTCAACCATCAAGGGTTTCAGATGTTTCCTTTGACTGAAGATTTGGTGTCACCAAATGTTGAAGTTGATAACTCTGATGGTGGCTCAGGTTCTTCTTCTTCACACTCTAGTTCCCTTCTCTTCTATCTATCTGTTCTCAAAGATAAGCTTAGTCAAGTGCAGACCCTTGTTGGTGTTATTCTCTCTCCAGATCAGAGTTTACCCGAGTCAACATCCATGGCCATATCAAGCATGAACTCCACAATCCATGAAATCATAGTCACTGCAACTTCAATGATGTTGACTAGCCAACAGATGATGGATCCTCCAGGTACTACTACCACTACTAATGATTGCACCAACGATTTGCACCATCAACAAATTGCTCAATCAAATTTTGGTAACAATGATAAAGGTGTGCTTAGTAACATAGCCCCAAATAATGAAAATATTAGATGCCAGGGTTTCTTTCCTAGTACTGAGTCTGAAGCCCTTGATTGGTTTGGTCAAAGCTATAACAACAATAGTATGAATAATATTAATAATTGCAACCTTAAGAATGAAGTTGCAATTAGTGAAAACAATAATGTGTCACAAGGGGATCATGGAAATGATGAAAGCTATAATATTAATAGAGGGCCTAATAATTCTTCAACAAAGAACTATGATGTAATTGAATTGGATGCTGATGATTTGTTGGCTAAGTACACACATCATTGCCAAGTTTGTGGTAAGGGGTTTAAGCGTGATGCAAATTTGAGGATGCATATGAGAGCTCATGGAGATGAATACAAGACAAGTGATGCATTGAAAAACTCATTGAAGAATAGTGGTACCTCATTGGGTAATGTGAAGCCTATTAAATATTCATGCCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCATGTCAAGTTTCAACCATTGAAGTCTATGATTTGTGCAAAGAATCATTACAAGAGAACACACTGCCCCAAGATGTACGTTTGCAAGAGATGCAACCAGAAGCAGTTTTCTGTGCTTTCTGATTTAAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAATGCTCATGTGGCACTACATTTTCTAGGAAAGACAAGCTTATGGGACATGTTACTTTGTTCGTGGGGCACCAGCCAGCTACTAATATTGGCTTGTGA 1167 0.3916 MISRATSSFNHQGFQMFPLTEDLVSPNVEVDNSDGGSGSSSSHSSSLLFYLSVLKDKLSQVQTLVGVILSPDQSLPESTSMAISSMNSTIHEIIVTATSMMLTSQQMMDPPGTTTTTNDCTNDLHHQQIAQSNFGNNDKGVLSNIAPNNENIRCQGFFPSTESEALDWFGQSYNNNSMNNINNCNLKNEVAISENNNVSQGDHGNDESYNINRGPNNSSTKNYDVIELDADDLLAKYTHHCQVCGKGFKRDANLRMHMRAHGDEYKTSDALKNSLKNSGTSLGNVKPIKYSCPQEGCRWNQKHVKFQPLKSMICAKNHYKRTHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVTLFVGHQPATNIGL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0154 388 Gene3D Classic Zinc Finger 217 287 - -
Lan10g0154 388 Gene3D Classic Zinc Finger 326 376 - -
Lan10g0154 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Lan10g0154 388 SUPERFAMILY beta-beta-alpha zinc fingers 237 264 IPR036236 -
Lan10g0154 388 PANTHER OS08G0562300 PROTEIN 3 385 - -
Lan10g0154 388 SMART c2h2final6 239 261 IPR013087 -
Lan10g0154 388 SMART c2h2final6 290 323 IPR013087 -
Lan10g0154 388 SMART c2h2final6 328 350 IPR013087 -
Lan10g0154 388 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 385 IPR044300 GO:0010044|GO:0010447
Lan10g0154 388 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0154 Lan-Chr10 999674 1001156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0154 44 383 C2H2 Transcription Factor Family AT5G22890 46.667 3.19e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0154 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0154 - - gmx:100802769 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0154 10 999674 1001156 Lan3g0099 3 684321 685928 LSH
Lan10g0154 10 999674 1001156 Lan7g0328 7 2209947 2211035 PCT
Lan7g0328 7 2209947 2211035 Lan10g0154 10 999674 1001156 PCT