Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0153 ATGGACCCAATGAACCTTCAACAAAACAATGTGGTGCACGTTAATGACTTTATCAATTTGATCCGTGGGGAAAATGAAGATCCCATCTATAACTTTGGTTCTGACCTTTTAAATGATTGCTTCATTGATAAACAATTCGTATCACTAGCTGGAAACTCAATATTTGATCAAAACAATAATGTTGTGAATGCCTATGATCCTAACTCTACATTGAGCTCATTCTCTTATTTTGGTGGGAAAGTTAAGGGTGAGGGAGAAGGAGAAGATGAAAATGATGGAATTTATTCTTCTTCTAAAACAACAACAACCACTATTATTGCAGGCGAATCTACCAAGGCCAAATCGAGGATGAAAACCGATAGGTCTAAGACTCTCATCACCGAGAGAAGGAGGAGAGGCCAAATGAAAGAGAAGCTTTATTCATTGCGTTCTTTAGTTCCTAACATAACTAAGATGGATAAGGCCTCAATCATTGGAGATGCAGTGGAATATGTGCATAGGCTTCAAGCCCAAGCTAACAAACTGAAGGCTGAGATTGCAGGACTTGAAACATCAACATTAGTGTATGAAAGTTATCAAGGTTCATCATCAATAATTGACGACCCCTTAAACATTCTAGTCACCAACAACAGCCATCCAATAAGCAAGATGATCATGCAGATTAAAATGTATCAAGTGGAAGAAAAAGGATATCATGGAAAAATAGCTTGCAATAAAGGACAAGGAGTGGCTGCTTCATTGTACAAGGCTCTTGAATCTCTTGCTGGTTTCAAAGTTCAGAATTCAAACTTGGTCACAGTTTGTGATAGTTTAATACTTACATTTACATTGAATGTAAAAGGTTGTGACCCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTTACTGGTGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATTTGCTCATGATGCTTAG 942 0.3779 MDPMNLQQNNVVHVNDFINLIRGENEDPIYNFGSDLLNDCFIDKQFVSLAGNSIFDQNNNVVNAYDPNSTLSSFSYFGGKVKGEGEGEDENDGIYSSSKTTTTTIIAGESTKAKSRMKTDRSKTLITERRRRGQMKEKLYSLRSLVPNITKMDKASIIGDAVEYVHRLQAQANKLKAEIAGLETSTLVYESYQGSSSIIDDPLNILVTNNSHPISKMIMQIKMYQVEEKGYHGKIACNKGQGVAASLYKALESLAGFKVQNSNLVTVCDSLILTFTLNVKGCDPEINLPNLKLWVTGALLNQGFEFMAFAHDA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0153 313 Gene3D - 110 185 IPR036638 GO:0046983
Lan10g0153 313 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 308 - -
Lan10g0153 313 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 308 - -
Lan10g0153 313 SMART finulus 125 174 IPR011598 GO:0046983
Lan10g0153 313 Coils Coil 165 185 - -
Lan10g0153 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Lan10g0153 313 Pfam Helix-loop-helix DNA-binding domain 125 169 IPR011598 GO:0046983
Lan10g0153 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0153 Lan-Chr10 991842 994548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0153 17 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.993 5.39e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan10g0153 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0153 - - gmx:100805451 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1916 6 30122438 30124736 Lan10g0153 10 991842 994548 LSH
Lan10g0153 10 991842 994548 Lan3g0097 3 666902 668485 LSH