Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0149 ATGGGAAGAGCTCCATGTTGTGATAAAGCAAATGTGAAGAAAGGGCCATGGTCACCAGAAGAAGACTCAAAACTGAAGGACTACATAGAGAAGCATGGCACTGGAGGAAACTGGATAGCTCTTCCTCAAAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGACTGAGATGGCTTAACTATCTTAGGCCCAACATCAAGCATGGAGAATTCTCTGAGGAGGAAGATAGAATAATTTGCACTCTTTATGCTAACATTGGAAGCAGGTGGTCCATTATAGCTTCTCAGTTGCCAGGTAGAACCGACAATGATATCAAGAACCACTGGAACACCAAGCTAAAGAAGAAGCTCATGGGGTTGCTTCCTTTTGAATCTCAATGTCATCAAAGAAAACCTCCATACCATTATTTCTCCCATCATCAAAACCCACCACTTCCTTCTTATTACACTCCTGCATCAACCATATCTTTCACAGGCCTTGAACCAATTCCTCTTGCTGCAAGTAACTCTCTTCCTTTTTACCAAAACCACGAGTCCTTAGTTAGTGTTAGTCCCATACAACAGTATCATTACCCTAATAGCCTGCAAGTGTTTGGAAGTGAAGTAAGTACTTGCAATTCATGTGATGGGAGCTATAGTCAGGTCAAGCAAGAAGAAATGAGTTTTCAGAACAACGTGTCCAATAGGTTTGAAGAGTATTGCAGCAATAATAATAATAGCTTTATGTTTAGTCATAGAAGCATTAATAATGATGGAAGTCATCATGAGTGTATTAAACAATGGGAAGAAAAGCCAAAAGGGTGGATTTTTCAACCACAAACCCCTTTGGATTATGAACTAGAGCTTATTTATAAGCAACTTATTAGTAGTAATAACAGCAGCAGCAGCAATAATGGTTACTTCAGTGTTGATGAAAACAAGACTGAGGAGAAGGTCATGTATACAACTACTGAGTGGAACTGA 963 0.3956 MGRAPCCDKANVKKGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICTLYANIGSRWSIIASQLPGRTDNDIKNHWNTKLKKKLMGLLPFESQCHQRKPPYHYFSHHQNPPLPSYYTPASTISFTGLEPIPLAASNSLPFYQNHESLVSVSPIQQYHYPNSLQVFGSEVSTCNSCDGSYSQVKQEEMSFQNNVSNRFEEYCSNNNNSFMFSHRSINNDGSHHECIKQWEEKPKGWIFQPQTPLDYELELIYKQLISSNNSSSSNNGYFSVDENKTEEKVMYTTTEWN* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0149 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan10g0149 320 PANTHER TRANSCRIPTION FACTOR RAX3 1 298 - -
Lan10g0149 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan10g0149 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan10g0149 320 SMART sant 67 115 IPR001005 -
Lan10g0149 320 SMART sant 13 64 IPR001005 -
Lan10g0149 320 CDD SANT 16 62 IPR001005 -
Lan10g0149 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan10g0149 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan10g0149 320 Gene3D - 70 132 - -
Lan10g0149 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan10g0149 320 CDD SANT 70 111 IPR001005 -
Lan10g0149 320 Gene3D - 7 68 - -
Lan10g0149 320 PANTHER OS09G0431300 PROTEIN 1 298 - -
Lan10g0149 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0149 Lan-Chr10 954036 956140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0149 1 119 MYB Transcription Factor Family AT5G57620 89.916 1.24e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0149 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0149 K09422 - gmx:100796382 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1924 6 30180658 30182589 Lan10g0149 10 954036 956140 LSH
Lan10g0149 10 954036 956140 Lan8g1648 8 23455192 23457011 PCT
Lan8g1648 8 23455192 23457011 Lan10g0149 10 954036 956140 PCT