Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0148 ATGGTATCTGACGCGAGTAAGAAGAAGGCTGCACAGAAGAAGGCTGCGGCGGCGGCCAAGCGAGGAGGCAAGGCGGCTGCTGCTTCATCCAAAGCGGCGCCGGCGGCTGATAAGATCGCAAATGGAATAGCTGATATTCAGATTTCAGATCGGAATTGCACTGGTGTTCTCTGCTCGCATCCCCTTTCTAGGGATGTTCGGATAGAGTCTCTCTCAGTGACTTTTCATGGACATGATCTGATAGTTGATTCCGTATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGGTTAAATGGTTGTGGAAAATCTACCCTGCTTACATCAATAGGTTGCAGAGAGCTTCCCATTCCAGACCACATGGATATTTTTCACCTTTCTAGGGAAATTGAAGCCTCTGATATGTCTGCATTGGAGGCTGTCGTGAACTGTGATGAGGAAAGGTTGAAATTGGAAAAAGAAGCTGAAACTTTGGCTGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGGGTTTATGAACGATTGGAAGCCATGGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAGATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAAAAGACACGTGATTTTTCTGGAGGCTGGAGAATGAGGATTGCTTTAGCTCGAGCTCTATTTATGAAGCCAACCATTCTTCTTCTTGATGAGCCAACCAACCACCTTGATTTGGAAGCCTGTGTGTGGTTGGAGGAAAACTTGAAGCATTTTGACCGTATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAATTATGATCAGTATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGTTCAGCAAAACTGGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTATCAAGGGACAGCGTCCTGGTATTCCGCTTTGTTGATGTGGGAAAGCTCCCCCCTCCTGTCCTCCAGTTTGTTGAGGTGTCATTTGGTTACACTCCTGATAATCTCATCTACAAGAATATTGACTTTGGGGTTGATTTAGACTCTAGGGTTGCCCTGGTTGGACCAAATGGAGCCGGGAAGAGTACATTACTGAAGCTAATGACAGGTGATTTGGTTCCATCAGATGGCATGGTAAAGCGCCATAATCACCTTCGAATTGCACAATATCACCAGCATTTGACTGAAAAGCTTGACATGGAAATGTCTGCTCTCCTGTTTATGATGAGAGAATACCCTGGAAATGAGGAAGAAAAGATGAGAGCAGCAATTGGCAAGTTTGGACTGACAGGTAAAGCGCAGGTGATGGCTATGAAGAATTTATCCGATGGGCAGAGAAGCCGAGTGGTATTTGCATGGCTAGCTTATAGACAACCTCAGATGCTACTATTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCATTGAACGAATGGGATGGTGGGATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTAGCCCATGAGATATGGGTCTGTGCTGATCAAAAAGTGACTAAATGGGATGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCCGGTTTATCTGACTGA 1779 0.4514 MVSDASKKKAAQKKAAAAAKRGGKAAAASSKAAPAADKIANGIADIQISDRNCTGVLCSHPLSRDVRIESLSVTFHGHDLIVDSVLELNYGRRYGLLGLNGCGKSTLLTSIGCRELPIPDHMDIFHLSREIEASDMSALEAVVNCDEERLKLEKEAETLAAQDDGGGEALERVYERLEAMDAATAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKHFDRILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVSRDSVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPSDGMVKRHNHLRIAQYHQHLTEKLDMEMSALLFMMREYPGNEEEKMRAAIGKFGLTGKAQVMAMKNLSDGQRSRVVFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTKWDGDIMDFKKHLKAKAGLSD* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0148 592 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 592 - -
Lan10g0148 592 Gene3D - 343 590 IPR027417 -
Lan10g0148 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 573 IPR027417 -
Lan10g0148 592 Coils Coil 142 162 - -
Lan10g0148 592 Pfam ABC transporter 277 353 IPR032781 -
Lan10g0148 592 Pfam ABC transporter 393 524 IPR003439 GO:0005524
Lan10g0148 592 Pfam ABC transporter 86 238 IPR003439 GO:0005524
Lan10g0148 592 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524
Lan10g0148 592 PANTHER - 1 592 - -
Lan10g0148 592 SMART AAA_5 402 590 IPR003593 -
Lan10g0148 592 SMART AAA_5 90 292 IPR003593 -
Lan10g0148 592 CDD ABCF_EF-3 377 569 - -
Lan10g0148 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 592 IPR003439 GO:0005524
Lan10g0148 592 Gene3D - 65 330 IPR027417 -
Lan10g0148 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 306 IPR003439 GO:0005524
Lan10g0148 592 CDD ABCF_EF-3 66 283 - -
Lan10g0148 592 Coils Coil 284 304 - -
Lan10g0148 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0148 Lan-Chr10 943371 948073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0148 377 572 Calmodulin-binding Proteins AT2G36910 26.872 3.57e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0148 K06185 - gmx:100809491 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1925 6 30191409 30196147 Lan10g0148 10 943371 948073 LSH
Lan10g0148 10 943371 948073 Lan3g0092 3 640509 645002 LSH