Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0140 ATGCCAATGAAGGAAGCTGAAAAGAGCATGGATCCTCAACTATGGCATGCATGTGCTGGTGGCATGGTTCAGATGCCACCAGTAAACTCCAAAGTGTTCTACTTTCCTCAAGGGCATGTTGAGCATGCACACACCAACCTTGATTTTGGAGCCTCCATGAGGATTCCACCACTCATTCTTTGTAGTGTTGCAGCTGTTAAGTTCTTTGCAGACCCTGAAACAGATGAGGTTTTTGCAAGGATAAGGTTGGTTCCTTTGAGAAACTCAGAGATTGATTATGATGATGGTGATGGTGGTTGTGCTAAGGCCTCTGAGAATTCAGAAAAGCCTGCTTCTTTTGCCAAGACATTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCAGTTCCTAGGTACTGTGCAGAAACCATCTTCCCAAAGCTGGATTACTCGGCCGAGCCACCGGTTCAGACTGTGATCGCCAAGGATGTGCATGGTGAGGTTTGGAAGTTTAGGCATATCTATAGAGGCACACCACGGCGCCACTTGCTTACGACTGGTTGGAGCAGTTTTGTAAACCAGAAGAAACTTGTTGCTGGTGATTCTGTTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTATCGGAATTCGTAGAGCCAAGCGGGGAATTAATGGAGGATCAGAAACCCCATCAGGGTGGAGTACTGGGGCTGGAAATTGTGGTATTGGACCTTATGGTGCATTTTCTGTTTTCTTGAGAGAGGAGAACAAGATTTTGAGAAATGGTTGTGGGAACTCAAGCCCTGGTGACCGCGGTAATTTGAGTGGAAGTGCAAAAGTGAGTGCTGAATCTGTGAAGGAAGCTATGGTACTTGCTGCTACCAAACAACCATTTGAAATTGTTTATTACCCAAGAGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGACAGTGAAGGCAGCTATGAGAATTCAATGGTGCTCTGGGATGAGGTTTAAGATGGCCTTTGAAACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCGCCTTGGCGTCTTCTTCAGGTTACTTGGGACGAGCCAGACTTGCTCCATAACGTGAAACATGTAAGCCCATGGTTGGTTGAATTGGTATCAAACAATATACCAGTCATCCATCTCAAACCTTTCTCTCCACCAAGGAAGAAGCCTAGGTTTCCACCACATCCAGACGTCCCCTACGATGTTCAGTTTCCGATACCAATGTTTTCGGGCAACACCACCGGGACTAGCAGCCCCTTGCGTTGTCTATCTGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCCACCTTCGCAATAATAAGCTCCAGTTCGGGGTGCTTCCGACTAACATTCAGCAGCGCAATTTGCATGCTGCTGGGATTTCTAATGGCAACATGACAAACCATGATAAGAGCAAAGAAAGCTTGTCATGCTTGCTAACCATGGGAAATTCTCACAAGAGCTTGGAGAAATCTGATAACGTTAAGATACACCAATTTTTACTATTCGGTCAACCAATACTAACTGAGCAACAAATTTCCGGAAGAGCTTGTTCTAGTGATTTGTTGTCTCAGAATTGTAGTACTGGGAATGATTTGCGATATGAGAATAAGGACAAAGGGAAGTGGCTTTTTAGTGACTCTCAATCTACACTTTTGCATCAGTTTTCACCTGGAAAATCTTGTAGTACCGAGTCTTGGAAACTTGATTTGGATACCTCTGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGAAGGACTGTAGACCTGTCAAGTCTTGGTTCTTATGAAGAGCTGTACAGGAGACTGGCCAACATGTTTGGAATAGAAAGGTCTGAGATGATGAGTCGTGTACTCTACCGTGATGCAACTGGTGCGGTTAAGCAAATTGGAGATGAACCCTTTAGTGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCAAGCACCAAAGATACTACAAGGACTTGGATAACAGGAACTAGGAATGGAGAACATGGATTAGATGCATCAAACAAGAGAGGTCATCTAAGCATATTTGCTTAA 2148 0.4446 MPMKEAEKSMDPQLWHACAGGMVQMPPVNSKVFYFPQGHVEHAHTNLDFGASMRIPPLILCSVAAVKFFADPETDEVFARIRLVPLRNSEIDYDDGDGGCAKASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCIGIRRAKRGINGGSETPSGWSTGAGNCGIGPYGAFSVFLREENKILRNGCGNSSPGDRGNLSGSAKVSAESVKEAMVLAATKQPFEIVYYPRASTPEFCIKASTVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKHVSPWLVELVSNNIPVIHLKPFSPPRKKPRFPPHPDVPYDVQFPIPMFSGNTTGTSSPLRCLSDNAPASIQGARHAQIGISLSDLHLRNNKLQFGVLPTNIQQRNLHAAGISNGNMTNHDKSKESLSCLLTMGNSHKSLEKSDNVKIHQFLLFGQPILTEQQISGRACSSDLLSQNCSTGNDLRYENKDKGKWLFSDSQSTLLHQFSPGKSCSTESWKLDLDTSGHCKVFMESEDVGRTVDLSSLGSYEELYRRLANMFGIERSEMMSRVLYRDATGAVKQIGDEPFSDFMKTAKRLTILTDSSTKDTTRTWITGTRNGEHGLDASNKRGHLSIFA* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0140 715 Gene3D - 111 215 IPR015300 -
Lan10g0140 715 SUPERFAMILY DNA-binding pseudobarrel domain 108 219 IPR015300 -
Lan10g0140 715 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan10g0140 715 SMART B3_2 113 215 IPR003340 GO:0003677
Lan10g0140 715 Gene3D - 321 393 - -
Lan10g0140 715 CDD B3_DNA 112 213 IPR003340 GO:0003677
Lan10g0140 715 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Lan10g0140 715 ProSiteProfiles PB1 domain profile. 603 686 IPR000270 GO:0005515
Lan10g0140 715 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Lan10g0140 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan10g0140 715 Gene3D - 601 687 - -
Lan10g0140 715 PANTHER AUXIN RESPONSE FACTOR 4 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0140 Lan-Chr10 877054 881351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0140 2 685 B3 DNA Binding Superfamily AT4G30080 56.916 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan10g0140 B3 6.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0140 - - gmx:100778135 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0140 10 877054 881351 Lan3g0084 3 570039 573736 LSH
Lan10g0140 10 877054 881351 Lan8g1662 8 23586370 23589963 PCT
Lan8g1662 8 23586370 23589963 Lan10g0140 10 877054 881351 PCT