Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0128 ATGATGCCTGAAGAACTCTTTTCTCTTCCTTCCAACATGAGAAACACCTTAGATATTCAACTTCATCACCCAAACTCAAGCCCTATTTCTAACCCTACTTCAAATCAAGCTAAGAAAAAGAGAAGTCTACCAGGAACACCAGATCCAGATGCAGAAGTGATTGCTCTTTCACCAAAGTCACTGGTGGCAACAAACCGGTTCATATGTGAAATATGCAAAAAGGGTTTTCAGAGAGACCAGAACCTTCAGCTGCATCGGAGGGGGCACAATCTGCCATGGAAGTTGAAGCAAAGAAACAAGCAAGAGGTTATAAAGAAGAAAGTGTACGTGTGTCCAGAGAAAAGTTGTGTGCACCATGACCCATGTAGAGCCTTGGGAGACCTTACTGGGATAAAGAAACACTTTAGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCAACAAGTGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAAAGAGTACAAATGTGAATGTGGCACTATGTTTTCAAGGAGGGACAGCTTCATAACTCATAGAGCTTTTTGTGGCGCCTTGGCTGAACAAAGTGCCAGAATTACAACTTCAGTTCCAGCAGTGTTTAACTTCAGAAATGATCATTTGATCAATACACAAGCACCAAGAAATCATCTTAGTTTACATGGGTTTCATCAAGAATTTGATGTGTCAGGACCAGAACCATTAATGGAAAATTTTATGGATGCAGAACGTGGACAGAAGCTGGGGCTGCCATTATGGCTAGACCAGGCCAATTCTAATGCAAATGAGGTAGTCCAAACAATGAACAGGAACATGTTTGGCTCATCACAACAGGCACAGTTTCTGAATTACAGGTACCCAGAACCTGAAGCATCATTTACAAGTGGCAATTTGTTATCTTTGCCTGGTGCAATGTCACAAGGGCTAAAGCAAAAACAAGAAGAAAACAAAGTAAACTTGTCTCATAGCTTTAGTTCTTTGCACTCTAGTGATCAGAACTTACAAGGTGTCCCAACTCACATTTCTACAAGGATCAATGATAATACAACCTTCAACAGCTCTAACAATCTTTTTGGCTTGAATAGTAATATTGTTGAAATGCAGACAATTTTGAAGCACGGAAATCAACAAGGTGGAAACTTCAACAATATGGTGGTGAGTTCATTAAATGATACGAATAATTGTAGTTCCTTTGGGAATTTGGATCATATAGTAATGCCGGTGGATGAAGAGCAACTGGGATTAACTAGAGATTTTCTAGGCGTTGGAGATGAAACATTAAGAACACCATTCCTGCACCAAGACCTTGATAAGTTCAACCCTATAGAATCGGTTTTGAACTTGCAAAGCCAGTTCGGTGGGCATCACAATATGATGAAATAG 1410 0.4035 MMPEELFSLPSNMRNTLDIQLHHPNSSPISNPTSNQAKKKRSLPGTPDPDAEVIALSPKSLVATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCNKCSKKYAVQSDWKAHSKICGTKEYKCECGTMFSRRDSFITHRAFCGALAEQSARITTSVPAVFNFRNDHLINTQAPRNHLSLHGFHQEFDVSGPEPLMENFMDAERGQKLGLPLWLDQANSNANEVVQTMNRNMFGSSQQAQFLNYRYPEPEASFTSGNLLSLPGAMSQGLKQKQEENKVNLSHSFSSLHSSDQNLQGVPTHISTRINDNTTFNSSNNLFGLNSNIVEMQTILKHGNQQGGNFNNMVVSSLNDTNNCSSFGNLDHIVMPVDEEQLGLTRDFLGVGDETLRTPFLHQDLDKFNPIESVLNLQSQFGGHHNMMK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0128 469 SMART c2h2final6 67 89 IPR013087 -
Lan10g0128 469 SMART c2h2final6 144 164 IPR013087 -
Lan10g0128 469 SMART c2h2final6 109 139 IPR013087 -
Lan10g0128 469 MobiDBLite consensus disorder prediction 19 49 - -
Lan10g0128 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 433 - -
Lan10g0128 469 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Lan10g0128 469 Gene3D Classic Zinc Finger 46 119 - -
Lan10g0128 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Lan10g0128 469 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lan10g0128 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 433 - -
Lan10g0128 469 MobiDBLite consensus disorder prediction 19 41 - -
Lan10g0128 469 Gene3D Classic Zinc Finger 122 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0128 Lan-Chr10 784557 786855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0128 37 208 IDZ Gene Family AT3G45260 82.558 3.66e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0128 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0128 K25870 - gmx:100817691 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0128 10 784557 786855 Lan3g0077 3 529024 531596 LSH
Lan10g0128 10 784557 786855 Lan8g1678 8 23695828 23698021 PCT
Lan10g0128 10 784557 786855 Lan13g0374 13 2515557 2517726 PCT
Lan8g1678 8 23695828 23698021 Lan10g0128 10 784557 786855 PCT
Lan13g0374 13 2515557 2517726 Lan10g0128 10 784557 786855 PCT