Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0117 ATGTTGAATTTTAATTTGAATGCTGATTCAACTGAGAACGATGACTCAGTCGAGGTGTTGGAAAGGTTTCCAGAAGCTTCTTCTGGAACCTCGAATTCCTCAATCGTGAATGCGGACGGTTCCAGCAACGGAGGAGGTGACGTGGACTCGTGCTCCACACGCGCCGGTGGAGGAAGTGGCGTTTTCACCTTCGATTTCGGTATCATGACGGTGAAAGGCATGAACAACGTTGTGACGCCGACGAAGGAGCTGTTTCCGATGAGTTCTGGAAATTGGAAGATGCAACAACCGTCAACTTCGTCGTTGTTACCGGCGAGGAAGACTGGCGTGAATCTCTCATTAGATGATGGCGAAAACAGTGGGACGATGAAGATGGTTCAGGCTCAGAAACAAACGCCTCAACAACCGGTGAAGAAGAGTAGGAGAGGACCAAGGTCCCGGAGTTCACAGTACAGAGGAGTCACTTTCTATAGAAGGACCGGTCGTTGGGAATCACATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGATACCGCTGATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATCAAGTTCCGGGGTGTTGATGCTGATATCAATTTCAATCTCATTGATTATGATGATGATCTTAAACAGATGAAAAATCTCTCCAAAGAGGAATTTGTGCACATACTACGTCGCCAAAGCACTGGTTTCTCTCGGGGGATCTCCAAATACAGAGGAGTGACACTTCATAAATGTGGCCGATGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGCCTATTCGACAACGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCAGTCACTAACTTTGAGCTAAGTACATATGAAAGCGACATGAAACCTGAAGCCATTAATGAAGGTGTCAGTCACAATCTAGACCTCAATTTGGGCATAGCAACCCCGGGACATGGACCCAAAGAAAACAAGGGGCATCTTCAGTTCCAGCCCTTTCCTTACAACATGCACCCTGGAAGAAGTTCAAGGATGGAGACCAATGTTAATTCAGTTATTGGTGACCCATCTTTGAAAAGGCTGGTTGTAACTGAAGAGCGTCCATTTGTTTGGAATGCCACATATTCCAGTTTTTTCCCCAATGAGGAAAGAGCAGAAAGAATCGTCCCACATCCTTCTCAAGGACTACCCAACTGGTCGTGGCAAACGCAGGGTCAGGTCACAACTTCCCCAATGACACAGTTCTCTACAGCAGCATCATCAGGATTCTCACTTTCAACTACCTTTCCACCAACTGCAATATTTCCAACAAAATCCATGAACCCAATTCCTCAGAGTCTCTGTTTCACTTCATCCAACGCACCTGTTAGTAATGCACCTCAATATTATTACCACGTGAAATCCCCAGAGGCACCACCCTAG 1458 0.463 MLNFNLNADSTENDDSVEVLERFPEASSGTSNSSIVNADGSSNGGGDVDSCSTRAGGGSGVFTFDFGIMTVKGMNNVVTPTKELFPMSSGNWKMQQPSTSSLLPARKTGVNLSLDDGENSGTMKMVQAQKQTPQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADAAARAYDRAAIKFRGVDADINFNLIDYDDDLKQMKNLSKEEFVHILRRQSTGFSRGISKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEVEAARAYDKAAIKCNGREAVTNFELSTYESDMKPEAINEGVSHNLDLNLGIATPGHGPKENKGHLQFQPFPYNMHPGRSSRMETNVNSVIGDPSLKRLVVTEERPFVWNATYSSFFPNEERAERIVPHPSQGLPNWSWQTQGQVTTSPMTQFSTAASSGFSLSTTFPPTAIFPTKSMNPIPQSLCFTSSNAPVSNAPQYYYHVKSPEAPP* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0117 485 MobiDBLite consensus disorder prediction 25 49 - -
Lan10g0117 485 MobiDBLite consensus disorder prediction 88 151 - -
Lan10g0117 485 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Lan10g0117 485 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 MobiDBLite consensus disorder prediction 23 51 - -
Lan10g0117 485 MobiDBLite consensus disorder prediction 88 139 - -
Lan10g0117 485 Pfam AP2 domain 241 291 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 452 - -
Lan10g0117 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 452 - -
Lan10g0117 485 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 SUPERFAMILY DNA-binding domain 149 206 IPR016177 GO:0003677
Lan10g0117 485 Gene3D AP2/ERF domain 241 301 IPR036955 GO:0003700|GO:0006355
Lan10g0117 485 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Lan10g0117 485 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 CDD AP2 150 205 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Lan10g0117 485 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0117 Lan-Chr10 707245 711733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0117 114 325 AP2-EREBP Transcription Factor Family AT4G36920 77.209 3.06e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan10g0117 AP2 9.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0117 K09284 - gmx:100777102 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1957 6 30502904 30506803 Lan10g0117 10 707245 711733 LSH
Lan10g0117 10 707245 711733 Lan8g1695 8 23821281 23825344 PCT
Lan8g1695 8 23821281 23825344 Lan10g0117 10 707245 711733 PCT