Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0105 ATGGCTCCACCTAAAGTTGATAAGAAGACCGATCCAAAGGCTCAGGCATTGAAAACTGCCAAAGCAGTCAAGTCTGGCCCTACCTTTAAGAAGAAGGCCAAGAAGATCCGAACATCTGTCACATTCCATCGGCCAAAGACCTTGACAAAGGATAGAAATCCTAAGTACCCTCGCATTAGTGCTACACCAAGGAACAAGCTCGATCATTATCAGATTTTGAAATTCCCTCTCACAACTGAGTCTGCGATGAAGAAGATTGAAGACAACAACACTTTAGTTTTCATTGTTGACATACGTGCTGACAAGAAAAAGATCAAGGATGCGGTGAAGAAGATGTATGACATCCAAGCCAAGAAAGTCAACACCTTAATCAGGCCTGATGGCACTAAGAAGGCCTATGTGAGGTTGACACCTGATTATGATGCTTTGGATGTAGCTAACAAGATTGGAATTATATAA 459 0.4205 MAPPKVDKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0105 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 -
Lan10g0105 152 MobiDBLite consensus disorder prediction 1 36 - -
Lan10g0105 152 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 152 - -
Lan10g0105 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lan10g0105 152 MobiDBLite consensus disorder prediction 1 15 - -
Lan10g0105 152 Gene3D - 33 152 IPR012677 -
Lan10g0105 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lan10g0105 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lan10g0105 152 Pfam Ribosomal protein L23, N-terminal domain 13 61 IPR005633 -
Lan10g0105 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lan10g0105 152 TIGRFAM uL23_arch: ribosomal protein uL23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0105 Lan-Chr10 610865 612829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0105 25 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 92.188 2.41e-69 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0105 10 610865 612829 Lan7g0259 7 1651936 1653333 PCT
Lan10g0105 10 610865 612829 Lan8g1703 8 23906140 23907870 PCT
Lan10g0105 10 610865 612829 Lan13g0346 13 2270128 2271868 PCT
Lan7g0259 7 1651936 1653333 Lan10g0105 10 610865 612829 PCT
Lan8g1703 8 23906140 23907870 Lan10g0105 10 610865 612829 PCT
Lan13g0346 13 2270128 2271868 Lan10g0105 10 610865 612829 PCT