Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0104 ATGAAGAGAGTCAGAGAAATAGAAGAGGGTGATATAGAGATGAATAATTGTTTGATGCTAATAACCAAAGTTGGTGAAATTAGTAACATCAACCAAAAAAAGGATGAGAAAGAGTTATTAACTAAGGATGGTGATTTTAAGTGCAAGACATGCAATAGAAGATTCTCTTCTTTTCAAGCACTTGGAGGCCACAGAGCTAGTCATAAGAAGCAAAAGCTCATGGTAAATAACCTTTCTTGCAATCATAATCATGAATCAATAAAAAGTACCATGAAACCAAAGATGCACCCATGCCCTATTTGTGGTGTTAAGTTTGGGATTGGACAAGCTCTTGGAGGGCACATGAGAAAGCATAGAGGTGCAATTAATCATGGTTTGGTTATTCATAAGCATGATAACTTGTGGTTCAAGAAATCTAAAGAAATGTCTTTGAATTTGTGTCTGGACTTGAATTTGGGGCCACCAGAGAATGATATTAAGCTAAGGACACATGTTTGA 498 0.3614 MKRVREIEEGDIEMNNCLMLITKVGEISNINQKKDEKELLTKDGDFKCKTCNRRFSSFQALGGHRASHKKQKLMVNNLSCNHNHESIKSTMKPKMHPCPICGVKFGIGQALGGHMRKHRGAINHGLVIHKHDNLWFKKSKEMSLNLCLDLNLGPPENDIKLRTHV* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0104 165 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lan10g0104 165 PANTHER ZINC FINGER PROTEIN ZAT5 9 162 - -
Lan10g0104 165 SMART c2h2final6 96 118 IPR013087 -
Lan10g0104 165 SMART c2h2final6 46 68 IPR013087 -
Lan10g0104 165 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Lan10g0104 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Lan10g0104 165 SUPERFAMILY beta-beta-alpha zinc fingers 46 118 IPR036236 -
Lan10g0104 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Lan10g0104 165 Pfam C2H2-type zinc finger 96 120 - -
Lan10g0104 165 Pfam C2H2-type zinc finger 46 71 - -
Lan10g0104 165 Gene3D Classic Zinc Finger 22 124 - -
Lan10g0104 165 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 9 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0104 Lan-Chr10 605802 606742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0104 1 157 C2H2 Transcription Factor Family AT5G59820 42.012 4.20e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0104 zf-C2H2_6 3.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0104 - - lang:109358309 349.362