Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0101 ATGTCTCAAAGAATGGGGACAAAGTTGTTCATCAGCAGATTATCGTTTTTTACCACAACGGAACAGCTTAAGGATTTGTTTTCCCCATTTGGAGTAATCACAGAAGCTAATTTAGTTTTGGACCCAAGAACTCGAAGGCCCAAAGGGTTTGGTTTTGTCTCCTATGAATCTGAAATTCAAGCGGAGAAAGCTATCAAAGCCATGAATGGCAGGATAGTTGATGGAAGGCTGATTTTCGTTGAACCTGCAAAAGTTGAATGA 261 0.4023 MSQRMGTKLFISRLSFFTTTEQLKDLFSPFGVITEANLVLDPRTRRPKGFGFVSYESEIQAEKAIKAMNGRIVDGRLIFVEPAKVE* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0101 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan10g0101 86 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
Lan10g0101 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 81 - -
Lan10g0101 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lan10g0101 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 81 - -
Lan10g0101 86 Gene3D - 2 86 IPR012677 -
Lan10g0101 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0101 Lan-Chr10 594147 596329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0101 6 84 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 3.81e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0101 K13195 - gmx:100781760 133.65