Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0100 ATGTCTGCAGCTCTAGATATGACGCTTGATGACATCATCAAGAATAACAAGAAATCTGGTTCCTCTAACACTCGTGGCCGTTCTCGTGGATCTGGATCGGGTCCAGGTCCAACTCGCCGCTTCAACAACCGTGCCGTCAACCGCTCTACACCTTATTCTACCGCTAAGGCACCGGAGACGGCATGGCAACACGACTTATATGCAGATCCGGCTGTGAATTTGGCGGCGGCGTTCCCAGGCCACGGTGGTCGTGCTTCTTCAATTGAAACGGGAACCAAGATCTATATATCTAATTTGGATTACGGTGTTTCTAATGATGATATCAAGGAATTGTTTTCTGAAGTTGGCGACGTGAAAAGGCATACTGTACATTACGACAGGAGTGGGAGATCAAAGGGTACAGCAGAAGTTGTCTTCTCACGACGAGGTGATGCTGTAGCTGCGGTGAAGAGGTACAATAATGTTCAATTAGATGGCAAACCCATGAAGGTGGAGATTGTGGGAACAAACATTACTACACATGCTGTGGTGGCACCTGCTGCAAATGTAGCTTTTGGAAACTTAAATGGAATTCCCAGAAGTGGACAAGGGAGAAGTGGGGCATTGGGAAGGCCACGTGGTGGGGGAAGTAGAGCACGTGGCGGAGCTCGAAGGGGTCGAGGACGAGGAAGTGGAAGTGGAAGAGGTCGTGGTGAAAAGGTGTCTGCAGAGGACCTTGATGCTGATTTGGCTAAGTATCATGAAGAGGCAATGCAATTGAACTAA 765 0.4876 MSAALDMTLDDIIKNNKKSGSSNTRGRSRGSGSGPGPTRRFNNRAVNRSTPYSTAKAPETAWQHDLYADPAVNLAAAFPGHGGRASSIETGTKIYISNLDYGVSNDDIKELFSEVGDVKRHTVHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKVEIVGTNITTHAVVAPAANVAFGNLNGIPRSGQGRSGALGRPRGGGSRARGGARRGRGRGSGSGRGRGEKVSAEDLDADLAKYHEEAMQLN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0100 254 MobiDBLite consensus disorder prediction 225 241 - -
Lan10g0100 254 SUPERFAMILY RNA-binding domain, RBD 33 166 IPR035979 GO:0003676
Lan10g0100 254 MobiDBLite consensus disorder prediction 190 241 - -
Lan10g0100 254 Gene3D - 82 236 IPR012677 -
Lan10g0100 254 SMART rrm1_1 93 165 IPR000504 GO:0003723
Lan10g0100 254 SMART FoP_duplication_2 181 254 IPR025715 -
Lan10g0100 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Lan10g0100 254 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 253 - -
Lan10g0100 254 MobiDBLite consensus disorder prediction 13 58 - -
Lan10g0100 254 MobiDBLite consensus disorder prediction 14 57 - -
Lan10g0100 254 Coils Coil 236 254 - -
Lan10g0100 254 Pfam C-terminal duplication domain of Friend of PRMT1 195 248 IPR025715 -
Lan10g0100 254 CDD RRM_THOC4 92 166 - -
Lan10g0100 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Lan10g0100 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0100 Lan-Chr10 590639 593760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0100 91 166 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 8.51e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0100 K12881 - gmx:100783362 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1969 6 30617566 30620600 Lan10g0100 10 590639 593760 LSH