Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0093 ATGGGAATTTGTTTTTGCAACCAAATTAAAGCTGAAAGCCCCTATAACAGTGTGTTTATTTCAAAGAATGTGAGTACAAATGGAAGTGATCTGAGCAAAGATAAGGCCTCAGTAGTGTTGGTTCCTCGGAGCGAGGGCGAGATATTGCAGTCATCAAATTTAAAGAGCTTTACTTTAGCAGAACTTAAGATTGCTACTAAGAATTTCCGTCCAGATAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTCAAGGGCTGGATTGATGAGAATTCTTTGGCTCCTGCGAAACCCGGCACTGGTATTGTTATTGCTGTCAAAAGACTTAATCAAGATAGCATACAAGGTCACAGAGAGTGGTTGGCTGAAGTCAACTTTCTAGGACAGTTTTCTCATCCTCATCTTGTGAGATTGATTGGATATTGTCTTGAAGATGAACATCGTCTTCTTGTCTACGAATTTATGCCTCGTGGAAACTTGGAGAATCATTTGTTTAGGAGAGGCTCTTATTTTCAACCACTTTCTTGGAGCCTCCGATTGAAGGTTGCTCTTGATGCTGCCAAAGGACTTGCATTTCTGCACAATGCTGAAAACAAAGTGATATATCGAGATCTCAAAACTTCAAATATCTTGCTCGATTCGAATTATAAAGCAAAACTTTCGGATTTTGGGCTAGCGAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCAACCAGGGTAATGGGAACCTATGGATATGCAGCTCCCGAATATGTAGCCACTGGTCATCTTACTACAAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTCCTGGAAATGATATCTGGCAAGCGAGTAGTTGACAAGAATCGACCAACTGGAGAACACAATTTGGTGGAATGGGCTAAACAATACCTGGCTAACAAACGTAAGATTTTTCGAGTTTTGGACAGCCGTCTCGAAGGGCAATACTCAATAGATGAGGCCTATAAGGTAGCAACGCTTGCTTTGCGATGCCTATCAACAGAAATCAAGTACAGACCCAACATGGACCAAGTTGTTGCAGTTTTGGAGCAGCTGCAGGTTCGTAATGTAAATGGAAGGAATCAAAATAGTGCTGATGATGCTAACCATGGAAGGGTCCCCACGGCTTATCCCCGACCCTCCGCTTCCCCTCTCTATGCTTGA 1170 0.4248 MGICFCNQIKAESPYNSVFISKNVSTNGSDLSKDKASVVLVPRSEGEILQSSNLKSFTLAELKIATKNFRPDSVLGEGGFGSVFKGWIDENSLAPAKPGTGIVIAVKRLNQDSIQGHREWLAEVNFLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGNLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHNAENKVIYRDLKTSNILLDSNYKAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYVATGHLTTKSDVYSFGVVLLEMISGKRVVDKNRPTGEHNLVEWAKQYLANKRKIFRVLDSRLEGQYSIDEAYKVATLALRCLSTEIKYRPNMDQVVAVLEQLQVRNVNGRNQNSADDANHGRVPTAYPRPSASPLYA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0093 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lan10g0093 389 SMART serkin_6 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0093 389 Gene3D Phosphorylase Kinase; domain 1 44 154 - -
Lan10g0093 389 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 26 368 - -
Lan10g0093 389 PANTHER OS01G0588500 PROTEIN-RELATED 26 368 - -
Lan10g0093 389 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Lan10g0093 389 SUPERFAMILY Protein kinase-like (PK-like) 44 351 IPR011009 -
Lan10g0093 389 CDD STKc_IRAK 75 354 - -
Lan10g0093 389 MobiDBLite consensus disorder prediction 360 389 - -
Lan10g0093 389 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0093 389 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Lan10g0093 389 Gene3D Transferase(Phosphotransferase) domain 1 155 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0093 Lan-Chr10 545520 547881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0093 47 351 Glycoside Hydrolase AT3G07070 50.000 3.34e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan10g0093 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0093 - - gmx:100788856 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1979 6 30685185 30688226 Lan10g0093 10 545520 547881 LSH
Lan10g0093 10 545520 547881 Lan7g0237 7 1479810 1482627 PCT
Lan7g0237 7 1479810 1482627 Lan10g0093 10 545520 547881 PCT