Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0087 ATGGATAAGAGCTGGATTCTGAATTTTCTGCTCCTCATCCTCCATTTACGTATAACACAAGCTGCATTTGGTGTTGGAGGTGGTGTAGGTGTTGGTGTTGGTGGTGGAAGTGGTGGAGTTTTTTGGGTTGGTGGAAAGATTAACAGCCCAGAGGCACCTAAATCTTCAGTGTCAAAGTTGGATGGAGCTTACACAGCTCTTCAGGCTTGGAAATCTGTAATCACCAATGACCCTCTAAAGATTTTAGATAGTTGGGTTGGTCCTGATGTGTGTTCTTACAAAGGAGTGTTTTGTTCAAATCTTCAATCTGAAATGGCTTCATCAACTGTACTTGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTCCAAGGAACACTTGTCAAAGAGCTCTCTTTACTCACTGATATGTCTCTTCTCCACCTCAACAGTAACAGATTCACTGGCACAGTTCCTAATACATTCAAAGACCTTACATCATTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTTCCTTCTGTCACTTTATACATGCCAAGCCTCTTCTACTTGGACATCAGATTCAACTCCTTCTCAGGTTCCCTCCCACAAGAACTTTTCAGTAAGAATCTTGATGCAATATTTGTTAACAACAATCAATTTGAAGGTGAGATTCCTCAAAACTTGGGTAACTCTCCTGCCTCAGTCATAAACTTAGCCAACAACAACCTCAATGGAAACATACCAACAAGTTTTGGCTTCATGGGTTCTAAAGTAAAAGAGATTCTCTTCCTTAATAACCAATTAACAGGTTGCATTCCTGAAGGAGTAGGGCTATTCACAGAGATCCAAGTTCTTGATGTGAGTTTCAATTCACTTATGGGTCATGTACCAGACACACTATCTTGCATGGAAAATATAGAAGTCCTTAACTTGGCACATAACAAACTTTCTGGAGAGTTATCAGAAGTACTTTGCTCTCTTAGAAGCCTTGCAAATCTAACAGTTGCATACAATTTCTTCTCTGGTTTCAGCCAACAATGTTCAAAGCTTTTCTTTAGGAATATTGGTTTTGATTTTTCACTTAACTGCATTCCTGGAAGGAACATGCAAAGACCTCAACCTGAATGTTCTGTGGTACCAGGTGGTAGCCTAAGTTGTATCAGAATCCCAACACCAAAGCCTCTTGTTTGTGGTTCCTTGGTTGTAAGTACTACTAACAACACTCATCACACTTCAGTCACTTCACCATCACAATCTCCTTGA 1257 0.4041 MDKSWILNFLLLILHLRITQAAFGVGGGVGVGVGGGSGGVFWVGGKINSPEAPKSSVSKLDGAYTALQAWKSVITNDPLKILDSWVGPDVCSYKGVFCSNLQSEMASSTVLVVAGIDLNHANLQGTLVKELSLLTDMSLLHLNSNRFTGTVPNTFKDLTSLEELDLSNNQLSGPFPSVTLYMPSLFYLDIRFNSFSGSLPQELFSKNLDAIFVNNNQFEGEIPQNLGNSPASVINLANNNLNGNIPTSFGFMGSKVKEILFLNNQLTGCIPEGVGLFTEIQVLDVSFNSLMGHVPDTLSCMENIEVLNLAHNKLSGELSEVLCSLRSLANLTVAYNFFSGFSQQCSKLFFRNIGFDFSLNCIPGRNMQRPQPECSVVPGGSLSCIRIPTPKPLVCGSLVVSTTNNTHHTSVTSPSQSP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0087 418 Pfam Leucine rich repeat 139 194 IPR001611 GO:0005515
Lan10g0087 418 ProSiteProfiles Leucine-rich repeat profile. 160 181 IPR001611 GO:0005515
Lan10g0087 418 Gene3D Ribonuclease Inhibitor 63 229 IPR032675 -
Lan10g0087 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 414 - -
Lan10g0087 418 SUPERFAMILY L domain-like 64 347 - -
Lan10g0087 418 Gene3D Ribonuclease Inhibitor 230 352 IPR032675 -
Lan10g0087 418 PRINTS Leucine-rich repeat signature 161 174 - -
Lan10g0087 418 PRINTS Leucine-rich repeat signature 301 314 - -
Lan10g0087 418 Pfam Leucine rich repeat N-terminal domain 64 99 IPR013210 -
Lan10g0087 418 PANTHER LRR/EXTENSIN 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0087 Lan-Chr10 511496 513307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0087 59 386 Leucine-rich Repeat extension Gene Families AT3G24480 50.000 1.54e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0087 - - gmx:100775544 623.624