Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0080 ATGATGCTAGGGGAGCACCATCGATCAAATCCAACCATCCACGTACCCCCATGGCAAGATCCAACGGAGGATATGTACTCTCCTTACTTATATAACGGCGTTACTGACGGCAATGCCAACGCCGGTGATTACTCTCCCTATTACATGCAGGAAGCGTTGACGGCGCTGCAGCGTTACCTTCCTTCGAATGAAGAAGATGGTGACTCGGAATCTGAGATTCTGGGTCGTGAATCAGACGCGCCAGTGGACGCGTACTCTTGTGACCAGTTTCGCATTTACGAGTTCAAGATACGTAAGTGCTCACGTGGTAGGTCACATGACTGGACTGAATGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGATCCCCGTAAGTTTCACTATTCCGGCACGGCGTGCCCTGATTTTCGTAAAGGAAATTGCAAGAAAGGTGACGCGTGTGAGTACGCACATGGAGTTTTCGAGTGCTGGCTTCACCCCGCGCGTTACCGCACGCAGCCATGCAAGGACGGTACAAGTTGCCGGAGGAGGGTTTGCTTCTTCGCTCACACGCCGGAACAGTTAAGAATCGTTCCTAATCACAGCCCTAGAAGCGTTGATTCATATGATGGATCTCCTGTGATAAACGGGACGATGGCGTTTTTGTCGTCTCCTGTTTCTATCTCGCCGCCGGTGAGTTCTCCGGTGGAATCACCGCCTATGTCTCCGATGGAAAGAAGCTCGATCAGTGAAATGATGGCTTCTCTTCGTAACTTGCAACTGGGGAAGTTGAAATCTATGCCTTGTAATAGAACCGTTATTCCATTGGGATTGGGGTCACCAGGGTTCGGGTCACCAAGAGGTTCGGTGCTCCGACCCGGGTTCATTAGCCTCCCATCTACCCCGACCCAGGTTCCGGGTCGGGGCGGTGTTAGTCACTTTGATCTTTGGGATCAGAGTTGTGAGGAGGAGCCTGTGATGGAGAGAGTGGAATCTGGGAGAGGCATAAGAGCAAAAATGTTTGAGAAATTGAGCAAGGAGAACTCTCTTGATGGGTCGGGTCATGTTTCCGGTGGAGCCCCAGATGTTGAGTGGGTTTCAAAGCTAATAGATTGA 1101 0.5159 MMLGEHHRSNPTIHVPPWQDPTEDMYSPYLYNGVTDGNANAGDYSPYYMQEALTALQRYLPSNEEDGDSESEILGRESDAPVDAYSCDQFRIYEFKIRKCSRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRIVPNHSPRSVDSYDGSPVINGTMAFLSSPVSISPPVSSPVESPPMSPMERSSISEMMASLRNLQLGKLKSMPCNRTVIPLGLGSPGFGSPRGSVLRPGFISLPSTPTQVPGRGGVSHFDLWDQSCEEEPVMERVESGRGIRAKMFEKLSKENSLDGSGHVSGGAPDVEWVSKLID* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0080 366 PANTHER UNKEMPT FAMILY MEMBER 7 365 IPR045234 -
Lan10g0080 366 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 365 - -
Lan10g0080 366 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Lan10g0080 366 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Lan10g0080 366 Gene3D - 130 193 - -
Lan10g0080 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Lan10g0080 366 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0080 Lan-Chr10 463989 465276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0080 85 261 C2H2 Transcription Factor Family AT5G12850 51.042 3.11e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan10g0080 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0080 - - aprc:113867365 565.074