Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0066 ATGGTTTGTGAGATGGAGAGTGAGTGTATTGAAGACATGGACATTGAAGGCCTCCCTTCAATGTGGCCTGAAGATATTGTAACCGATGTCGGAAAACAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAAGTGACAATCTTAGAGGAACCAACTATAGCTGATTTCCAACGCCTTATGGAGCTTACCAATTACACTGACAAAGGGTCTTCTCAGTTGGCGTACCTTATGAAACACTGGGAGTATAAGCAGGCCAATGCAGTACGTCTTCTTAGAGAAGAACTCGACAACCTTAACAAACAAAGGCAGGAAGTTGAGCTCAGGAAGTTGGAGATATTAGAATATGATCGATTCGAAGAGGAAAATTATGGCGGTGATAAACGCCCGGTTTCTATATTGGACGAAGTTTACTATACATGGAAGGATGTACCAATGAAGAAAAGTGAAGTTGTTGTTCAAAACAAGAGAATTGAAATTGATGCCGAGTATGACACCGTTGTATATTGGAAACAGCGGGCGCTGCAATTGGAAAAACAGTTGGAGGCAAGTATTCAGAGAGAGCAAGTACTCGAGGAAAAGTTGCAAGAAAGTATAGAGACTATTGAAAGACAGTCCTCACCTGTTGAAGAACTATCCCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTAATTGGCCATCAGGACAAAGAGTTACGCTATCGCTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATAATAGGAAAAACGGATGTCGAAATTTTCTCAGGATCAGGGGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTTATGGAAAAAGGATTACCTGCGAAAAAGGAAATTACTTTTGAGACAGAATTGTTTGGCTCAAAGATATTCTTGATATATGTAGAACCGGTTTTCAGCAAGGCAGGTGACACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCGATACTTCGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAGACCATGCGGGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCGCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGCGAGCAAAAACAGCTTTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAGCTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACTGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGACATGTGGCAGATGATATACCTATTGAGGTCATTGGTGATGTTTTAAGGATCCGGCAGATTCTCACAAATTTAATCAGCAATGCGGTCAAGTTTACACATGAAGGCAAAGTTGGTATAAACCTTTACGTTGTGGCAGAGCCACCTTTTGCGAAAGCAGAAGAATGTCACCAAAATTCAAATTCGGAACAGTTAACTATTTCAGCTAATGGCGTGAGAGAAGAGAAACATCCATCAACACCTCAAAGTGGTGGCAGTGAACAAAATCTTCATAATGGTCAAAGTCACAATGACCATACCAGCCAAATTCATGCTTTTAATGATGAATGTAGATCTTCAGTTAAAAGTGAGTGTTCAATGAGTGGAGACGGTGAGGGGCAAACTCATTCAACTGAAACAACCGTGTGGATATGTTGTGATGTTTATGACACAGGAATTGGAATACCAGAAAAGGGCATACATACTCTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGGGGCACAGGGCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTAATGGGTGGTCGTCTAACAGTGTCAAGCAAAGAACATTGTGGTTCTACCTTCACCTTCATACTCCCATACAAGGTTTCAACCACTTGTGACAATGATTCTGATGACTTTGATGTGGAGAAAAATGATGGCATGTCTGATGATACAACACAGGGCTTCTTCCAATTCCAACCACGCACTTTGGGATCTCTATTCTCATCTAATGGATCCAGCAGGCCACAAAATATATTACCAGGTTACAGAACCTCACACAAGTTTAATGGGTTTTCAGAGAATTCTCACTCATTCCCCTCTAGTAATACTATATCATCAGAAGTGACAAGTAACACAAGTTTAGTCGAGGATGCGTCTTCAGTGGTTGTTGATGCCCCGGAGATGTCTGAATCACCAACCTCATCAATACCAGAAACAGAACATGAAAGTTTAGTTGATAGAAACAAACAGCACCAAGATAATACACATGCTAAGTTACAGAATGGTAATGCTGTTTTTTCTCCACTTAAGGCGGAATGTCGAGGAATGAGTGTAATAACAAACTCAAGTGAACCTCAGCATACATGTCAGGGTCAAGTGAAGGCAGACATAACTTCTCAATGTGTTACTAGCAGCAACAACACATCATCAGAATTAAGCAAATCCACATTAAAGCCAAAGATCCTTCTTGTTGAAGATAACAAGATCAATATCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGCATGGATGTTGTGAATAATGGAGTCGAAGCCATACGTGCAGTTCAGCGCCACTCATATGACCTCATTCTAATGGATGTTTTCATGCCAGTTATGAATGGGATTCAAACAACAAAACTGATCCGGTCTTACGAGGAAGCAGGAAACTGGGATGCTGCAAGAAAAGCTGGTTTTGAGCAAGTACTACCACCTTCAGATTATGAATGTTCTATACCACCTAAAAAGCGCACCCGCATCATCGCGATGACAGCAAACACATTATCAGAGAGTGCTGAAGAATGTTTTGCAAATGGAAGAAGCTTGGTGGAAAAGAATGACGTTAAAGCATCATACACATTATTTTCCTAA 3036 0.4028 MVCEMESECIEDMDIEGLPSMWPEDIVTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLNKQRQEVELRKLEILEYDRFEEENYGGDKRPVSILDEVYYTWKDVPMKKSEVVVQNKRIEIDAEYDTVVYWKQRALQLEKQLEASIQREQVLEEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFSGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKIFLIYVEPVFSKAGDTIGINYMGMEITDQVRKRERMAILREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQKQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGHVADDIPIEVIGDVLRIRQILTNLISNAVKFTHEGKVGINLYVVAEPPFAKAEECHQNSNSEQLTISANGVREEKHPSTPQSGGSEQNLHNGQSHNDHTSQIHAFNDECRSSVKSECSMSGDGEGQTHSTETTVWICCDVYDTGIGIPEKGIHTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTTCDNDSDDFDVEKNDGMSDDTTQGFFQFQPRTLGSLFSSNGSSRPQNILPGYRTSHKFNGFSENSHSFPSSNTISSEVTSNTSLVEDASSVVVDAPEMSESPTSSIPETEHESLVDRNKQHQDNTHAKLQNGNAVFSPLKAECRGMSVITNSSEPQHTCQGQVKADITSQCVTSSNNTSSELSKSTLKPKILLVEDNKINIMVTQSMMKRLGYSMDVVNNGVEAIRAVQRHSYDLILMDVFMPVMNGIQTTKLIRSYEEAGNWDAARKAGFEQVLPPSDYECSIPPKKRTRIIAMTANTLSESAEECFANGRSLVEKNDVKASYTLFS* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0066 1011 Gene3D PAS domain 212 344 - -
Lan10g0066 1011 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1000 - -
Lan10g0066 1011 SMART REC_2 872 1007 IPR001789 GO:0000160
Lan10g0066 1011 MobiDBLite consensus disorder prediction 793 807 - -
Lan10g0066 1011 MobiDBLite consensus disorder prediction 541 569 - -
Lan10g0066 1011 Coils Coil 177 208 - -
Lan10g0066 1011 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Lan10g0066 1011 Pfam Response regulator receiver domain 874 941 IPR001789 GO:0000160
Lan10g0066 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 679 IPR003594 -
Lan10g0066 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Lan10g0066 1011 Gene3D - 359 436 - -
Lan10g0066 1011 SUPERFAMILY CheY-like 872 994 IPR011006 -
Lan10g0066 1011 Gene3D - 437 686 IPR036890 -
Lan10g0066 1011 ProSiteProfiles Response regulatory domain profile. 873 1011 IPR001789 GO:0000160
Lan10g0066 1011 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Lan10g0066 1011 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Lan10g0066 1011 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1000 - -
Lan10g0066 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 455 678 IPR036890 -
Lan10g0066 1011 Coils Coil 92 112 - -
Lan10g0066 1011 ProSiteProfiles Histidine kinase domain profile. 378 681 IPR005467 -
Lan10g0066 1011 SMART HKATPase_4 482 681 IPR003594 -
Lan10g0066 1011 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Lan10g0066 1011 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Lan10g0066 1011 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Lan10g0066 1011 MobiDBLite consensus disorder prediction 778 811 - -
Lan10g0066 1011 CDD REC_hyHK_CKI1_RcsC-like 874 994 - -
Lan10g0066 1011 CDD HATPase_EvgS-ArcB-TorS-like 487 678 - -
Lan10g0066 1011 Gene3D - 866 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0066 Lan-Chr10 378305 387353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0066 596 994 Histidine Kinase Gene Family AT5G10720 46.973 7.94e-101 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan10g0066 HATPase_c 4e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0066 - - gmx:100801640 1574.68