Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0062 ATGGCTGGTACTCATGATAGTAGTAGTTCCATGCAAAACCAATCTTGTAATAATGACTTAGCTTGTTCCAACAATATTAGTAAGTTGTATAGAGGGGTGAGGAAGAGAAAATGGGGTAAATGGGTATCTGAGATTAGGCTTCCAAATAGTCGTGACCGTATATGGTTGGGTTCTTATGATACTCAACTTAAGGCTGCTAGGGCTTTTGATGCAGCTCTTTACATTCTACGTGGTACCAATGCATGTTTCAATTTCCCTGACACGCCTCTCAACATGAACATAAACAATGTGGTTGTTCCTCGTGGCCGATCTCTTTCCCCTCAGGAAATTCAAGAGGTTGCTGCTAAGTTTGCAAATTATACACATACCCAACTTGAAACTCAAGAAGAAGAAGAAGAAGAAGAAGAACCATTAGAGTCACAAAGTGGTGTTGATTCATTTGGATTATTTGAATCAAAAACTACATCTTCTGGTTCTGGGTATGATAACTATGATGGGAAAATGGATTGGACATTTTTGAACATGTTGGATGATGACTCTAATGCAGTTGCGGGCTTCGATTGTAGACCTGATTATTGTGAACTAGACAAGACGTATTCATCAGGTGAGTTATTATATTACACACAACCACCACCACTTGAGGATAATAATGGGGATGAAACTGAAGGGAATGATGCTTTTTATAACCATTCAATCCTTTGGAGTTGGGACTTTTGA 717 0.3891 MAGTHDSSSSMQNQSCNNDLACSNNISKLYRGVRKRKWGKWVSEIRLPNSRDRIWLGSYDTQLKAARAFDAALYILRGTNACFNFPDTPLNMNINNVVVPRGRSLSPQEIQEVAAKFANYTHTQLETQEEEEEEEEPLESQSGVDSFGLFESKTTSSGSGYDNYDGKMDWTFLNMLDDDSNAVAGFDCRPDYCELDKTYSSGELLYYTQPPPLEDNNGDETEGNDAFYNHSILWSWDF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0062 238 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lan10g0062 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 12 238 - -
Lan10g0062 238 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lan10g0062 238 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lan10g0062 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 238 - -
Lan10g0062 238 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lan10g0062 238 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lan10g0062 238 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lan10g0062 238 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lan10g0062 238 MobiDBLite consensus disorder prediction 124 158 - -
Lan10g0062 238 Pfam AP2 domain 30 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0062 Lan-Chr10 349395 350442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0062 21 207 AP2-EREBP Transcription Factor Family AT1G19210 45.361 2.23e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan10g0062 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0062 - - lang:109358241 474.167