Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0039 ATGAACGACCTTCTTACTGATTCATTTGTTAGTGAGGCTAATAATGGCCAGCATTCTAGACAATCTGATATTGAAATGGGTTTGCAAGTTCCAAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCACGAGGCTGATAAACAAATTGATAAGCTCTCTCTGCTACTTCAAAAGCTAAAGGAGGCTAACGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCCATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCATATGGTGTCAAAACAAGAATAGAAGCTATAAGCAAAGATAATCTTAATAATAGACAAAAGCCTGGTTATGAGAAGGGAACGGGGATTGACCGAGCAAGGATGAATATGACAAATGCCTTGACTAAAAAGTTTAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAAGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATCGATCACCTGATAGAGACAGGAAACGGGGAACAAATCTTTCAGCAGGCAATTCTAGAAGCAGGCAGAGGACAGGTTGTAAGCACAGTTGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACATCTGCGCTTCAAAGTGCTAAGAAACTTCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCAGTCATAGTTGTTGGTGTTCTCAAACCTTGGAAGAGTAGCAAGGGTGCTTGA 933 0.3976 MNDLLTDSFVSEANNGQHSRQSDIEMGLQVPRSNSDMGMEAFNKQIHEADKQIDKLSLLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAYGVKTRIEAISKDNLNNRQKPGYEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNGEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQSAKKLQKNSRKWMCIAIIILLIIVAVIVVGVLKPWKSSKGA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0039 310 Gene3D - 203 302 - -
Lan10g0039 310 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 11 301 - -
Lan10g0039 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lan10g0039 310 CDD SNARE_syntaxin1-like 208 269 - -
Lan10g0039 310 Gene3D - 34 163 - -
Lan10g0039 310 PANTHER SYNTAXIN 11 301 IPR045242 -
Lan10g0039 310 Coils Coil 39 76 - -
Lan10g0039 310 Pfam SNARE domain 245 297 IPR000727 -
Lan10g0039 310 MobiDBLite consensus disorder prediction 1 26 - -
Lan10g0039 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lan10g0039 310 SMART tSNARE_6 204 271 IPR000727 -
Lan10g0039 310 CDD SynN 39 196 IPR006011 GO:0016020
Lan10g0039 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Lan10g0039 310 SMART SynN_4 34 160 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0039 Lan-Chr10 228165 232148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0039 1 310 SNARE and Associated Proteins AT3G03800 60.323 3.35e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0039 K08486 - gmx:100800991 537.339