Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0038 ATTATATGTCCATCATGTTCTCATGTTTTTCACTTTGTGATCGTATGGTTTAATTGGACAGTCACGGGAACTAGGCCAGATGATGAGACAATCGATCACCTGATAGAGACAGGAAACGGGGAACAAATCTTTCAGCAGGCAATTCTAGAAGCAGGCAGAGGACAGGTTGTAAGCACAGTTGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACATCTGCGCTTCAAAGTGCTAAGAAACTTCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCAGTCATAGTTGTTGGTGTTCTCAAACCTTGGAAGAGTAGCAAGGGTGCTTGA 486 0.4115 IICPSCSHVFHFVIVWFNWTVTGTRPDDETIDHLIETGNGEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQSAKKLQKNSRKWMCIAIIILLIIVAVIVVGVLKPWKSSKGA* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0038 161 Pfam Syntaxin 20 95 IPR006011 GO:0016020
Lan10g0038 161 PANTHER SYNTAXIN 20 152 IPR045242 -
Lan10g0038 161 CDD SNARE_syntaxin1-like 59 120 - -
Lan10g0038 161 Gene3D - 54 153 - -
Lan10g0038 161 Pfam SNARE domain 96 148 IPR000727 -
Lan10g0038 161 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 20 152 - -
Lan10g0038 161 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 60 122 IPR000727 -
Lan10g0038 161 SUPERFAMILY t-snare proteins 19 115 IPR010989 GO:0016020|GO:0016192
Lan10g0038 161 SMART tSNARE_6 55 122 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0038 Lan-Chr10 225272 227003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0038 19 161 SNARE and Associated Proteins AT3G03800 67.133 2.43e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0038 K08486 - gmx:100800991 244.202