Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0027 ATGGGATGGAGTAGAGGCCACATCATAGGCCATGGTTCATCAGCCATGGTCTACCTCGCCACCTCTCGCCACTCCTCCTCCTCCTCCTCCTCCTCTGCCACCACCTCCATCTCCGCCGTCAAGTCATGTGAGCTGTCAAGGTCAGAACATCTTCAAAGAGAACAAAATATCTTGTCCTCTTTATCCTCTCCTTACATAGTTACCTACAAAGGCTATGACATCACCTCAGAAAATAAAACCCTCTTCTACAATCTCTTCATGGAGTACATGCCTTTGGGCACGCTCACTCAATCCACTCTCCGCCACCACCACCACCACGGTGGCCGGATTAATGAGCCAGTCATGGCACACTATACAAGACAAGTGTTGCAAGGGCTAGAATACTTGCATTCAAAAGGGTTGGTGCATTGTGACATAAAGGGTAGCAATATATTGGTCAATGAAGATGGTGCCAAAATTAGTGACTTTGGATGTGCCAAGTATGTCAATAATAATGAGCTGCCACCAGGGGCTGCCGCGGCGATTAGTGGCACACCCATGTTTATGTCGCCGGAGGTGGCACGTGGAGAAGAACAAGGGTACCCTTGTGATATTTGGGCACTAGGATGCACCATGGTTGAAATTGCAACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTTTCTATCTTGTACCATGTTGCATATTCTAATGAGGTTCCTGAGATTCCAAGTTTTCTATCTGATCAAGCAAAGGATTTCTTAGGGAAATGTTTTATGAGGAATCCAAAGGAGAGATGGAGTGCTAGTCAACTTTTAAAGCATCCATTTCTTGTGGAATTCAATTCCAAAGGTAAGCAAATTTTGGAACCTAATTCATGTTCACCAACTAGTATTCTTGACCAAGGATTTTGGAATTCTGTGGAGGAATCAGAATGCCACCTTGTTAACAATTTGGTTCGGACAAGTTTGGAGAATTCTGCAGCTGGTAGGATCAGAGGGCTAGCTTTGCGTTCAAGGGATCCTAATTGGACATGGGATGATAAGAACTGGATCACAACAATAGGGAATAATGACGCAGTGGCTGAAATAGAGGCTTGTGATTATGGGCTTTTTGGGTCCGAGACTAGAAATTATTGCATCAGCCGAAACCATGTGGTCTTAACTAATAACAATATGACACCTAGAAATTTGTCATGCTACTATTGCTCACGACCACATGATCCCATGCTATGCAATAATTTGTCATCACAAACAGCTTCAAGTAGTGTTGGAGGGGATTTGGAGAAAAGCAATGTAGTTTGTAGTAGAATTAGTGATTACTTTTGTGAGGATTATGAATGTAGTCAATAG 1335 0.4382 MGWSRGHIIGHGSSAMVYLATSRHSSSSSSSSATTSISAVKSCELSRSEHLQREQNILSSLSSPYIVTYKGYDITSENKTLFYNLFMEYMPLGTLTQSTLRHHHHHGGRINEPVMAHYTRQVLQGLEYLHSKGLVHCDIKGSNILVNEDGAKISDFGCAKYVNNNELPPGAAAAISGTPMFMSPEVARGEEQGYPCDIWALGCTMVEIATGFAPWPNVEDPVSILYHVAYSNEVPEIPSFLSDQAKDFLGKCFMRNPKERWSASQLLKHPFLVEFNSKGKQILEPNSCSPTSILDQGFWNSVEESECHLVNNLVRTSLENSAAGRIRGLALRSRDPNWTWDDKNWITTIGNNDAVAEIEACDYGLFGSETRNYCISRNHVVLTNNNMTPRNLSCYYCSRPHDPMLCNNLSSQTASSSVGGDLEKSNVVCSRISDYFCEDYECSQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0027 444 SMART serkin_6 3 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0027 444 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Lan10g0027 444 Pfam Protein kinase domain 5 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0027 444 Gene3D Transferase(Phosphotransferase) domain 1 2 325 - -
Lan10g0027 444 ProSitePatterns Protein kinases ATP-binding region signature. 9 41 IPR017441 GO:0005524
Lan10g0027 444 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 363 - -
Lan10g0027 444 CDD STKc_MAPKKK 3 272 - -
Lan10g0027 444 ProSiteProfiles Protein kinase domain profile. 3 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0027 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Lan10g0027 444 PANTHER MAP KINASE KINASE KINASE 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0027 Lan-Chr10 140051 141552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0027 1 302 MAP Kinase Kinase Kinase AT2G32510 52.104 1.10e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan10g0027 Pkinase 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0027 K20716 - pvu:PHAVU_005G115900g 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0027 10 140051 141552 Lan7g0417 7 2931947 2933125 PCT
Lan10g0027 10 140051 141552 Lan8g1556 8 22590667 22591995 PCT
Lan7g0417 7 2931947 2933125 Lan10g0027 10 140051 141552 PCT
Lan8g1556 8 22590667 22591995 Lan10g0027 10 140051 141552 PCT