Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0017 ATGTTTGGGAGAGCAGCGAAGAAGAGCGATAACACGAGATATTACGATATATTGGGAGTTTCTAATAACTCTTCTCATGATGATTTGAAAAAAGCCTATAAGAAAGCTGCCATTAAAAACCACCCTGATAAAGGTGGTGATCCTGAGAAGTTCAAAGAGCTGGCCCAAGCTTATGAGGTTTTGAGTGACCCTGAAAAGCGTGAGATATATGATCAATATGGTGAAGATGCACTCAAGGAAGGAATGGGCGGCGGCGGCGGCGGCGGTGGTGGTCATGACCCATTTGACATCTTCCAATCTTTCTTTGGCGGGAGTCCATTTGGCAGTGGTGGTGGTAGTCGAGGAGGACGGAGGCAGAGAAGGGGTGAAGATGTGGTTCACCCACTCAAGGTCTCTTTGGATGATCTTTACCTTGGGACATCTAAGAACCTCTCTCTTTCACGAAATGCATTATGCTCAAAATGCACCGGAAAAGGCTCAAAATCTGGGGCTTCAATGAAGTGTGCTGCCTGTCAAGGAACCGGTATGAAGGTTTCAATTAGGCACCTTGGTCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACCGGAGAAACAATCAGTGAGAAAGACCGATGCACACAGTGCCAGGGGGAGAAGGTGGTCCAGGAGAAGAAAGTGCTACAAGTTATTGTGGAGAAGGGTATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGATACAATCACTGGGGATATTGTGTTCGTTCTACAGCAGAAGGAACATCCCAAGTTCAAAAGAAAGGCAGAAGACCTTTTTGTTGAGCACACTCTGTCCCTCACAGAGGCTTTATGTGGCTTCCATTTTGTGCTGACACACTTGGATGGTCGACAACTCCTTATCAAATCAAACCCTGGAGAGGTTATTAAGCCTGATTCATACAAGGCAATAAATGATGAAGGAATGCCATTGTACCAGAGGCCATTCATGAAAGGAAAGCTATACGTTCACTTCAGTGTGGAATTCCCTGATTCTGTGAGTCCTGATCAGGTGAAGGCTTTAGAGGCTGTTCTTCCATCAAAGCCTCCATCTCAGTTAACAGACATGGAGTTGGATGAGTGCGAGGAGACAACACTACATGATGTGAACATGGAAGAAGAGTTAAGGAGGAAGCAGCAATATCAACAACAGGAGGCATATGATGAGGATGAGGATATGCACGGTGGTGGTCAGAGAGTGCAGTGCGCTCAGCAGTGA 1269 0.4626 MFGRAAKKSDNTRYYDILGVSNNSSHDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGGGGHDPFDIFQSFFGGSPFGSGGGSRGGRRQRRGEDVVHPLKVSLDDLYLGTSKNLSLSRNALCSKCTGKGSKSGASMKCAACQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETISEKDRCTQCQGEKVVQEKKVLQVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFHFVLTHLDGRQLLIKSNPGEVIKPDSYKAINDEGMPLYQRPFMKGKLYVHFSVEFPDSVSPDQVKALEAVLPSKPPSQLTDMELDECEETTLHDVNMEEELRRKQQYQQQEAYDEDEDMHGGGQRVQCAQQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0017 422 MobiDBLite consensus disorder prediction 377 422 - -
Lan10g0017 422 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lan10g0017 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 269 358 IPR008971 GO:0006457|GO:0051082
Lan10g0017 422 CDD DnaJ 14 63 IPR001623 -
Lan10g0017 422 Pfam DnaJ C terminal domain 126 347 IPR002939 -
Lan10g0017 422 Pfam DnaJ domain 14 71 IPR001623 -
Lan10g0017 422 Pfam DnaJ central domain 152 218 IPR001305 GO:0031072|GO:0051082
Lan10g0017 422 CDD DnaJ_C 123 349 - -
Lan10g0017 422 CDD DnaJ_zf 152 218 IPR001305 GO:0031072|GO:0051082
Lan10g0017 422 Gene3D - 114 264 - -
Lan10g0017 422 SUPERFAMILY Chaperone J-domain 8 114 IPR036869 -
Lan10g0017 422 Gene3D - 266 348 - -
Lan10g0017 422 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 149 221 IPR036410 -
Lan10g0017 422 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 422 IPR044713 GO:0006457|GO:0030544
Lan10g0017 422 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lan10g0017 422 SMART dnaj_3 12 66 IPR001623 -
Lan10g0017 422 Gene3D DnaJ domain 10 113 IPR036869 -
Lan10g0017 422 Hamap Chaperone protein DnaJ [dnaJ]. 10 395 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lan10g0017 422 MobiDBLite consensus disorder prediction 380 413 - -
Lan10g0017 422 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lan10g0017 422 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lan10g0017 422 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lan10g0017 422 Gene3D - 152 218 - -
Lan10g0017 422 ProSiteProfiles Zinc finger CR-type profile. 139 223 IPR001305 GO:0031072|GO:0051082
Lan10g0017 422 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 422 - -
Lan10g0017 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 272 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0017 Lan-Chr10 96588 99032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0017 5 73 C2H2 Transcription Factor Family AT1G74250 38.462 7.04e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0017 K09503 - gmx:547558 720.309