Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0008 ATGCCTCTTTCAAACAAACCCTACCTCCCTTCTATTGCTGCTTCTTCTCCAACTATGAGTAAGCTTTCGAGTGATGCTGTTAGAGAAGCTATCTCTGGAATCGTTACTGATTCCAAGGAGAATAATCGTAAGTTTGTTGAAACTATTGAACTCCAAATTGGTCTCAAAAACTACGATCCTCAAAAGGATAAGCGTTTCAGCGGTTCTGTTAAGTTACCTCATATTCCTCGTCCAAAGATGAAGATTTGTATGCTTGGTGATGCTCAACATGTTGAAGAGGCAGAGAAGATAGGATTAGACTACATGGATGTTGAAGCGTTGAAGAAGCTGAACAAGAATAAGAAGTTGGTGAAGAAGCTTGCTAAGAAATACCATGCCTTTTTAGCTTCTGAAGCTGTCATTAAGCAGATCCCACGTCTCTTGGGCCCTGGTCTCAACAAGGCAGGAAAGTTCCCCACACTTGTTTCTCACCAAGAATCTCTGGAGTCAAAAGTGAATGAGACAAAGGCTATGGTGAAGTTTCAGCTTAAGAAGGTGCTATGCATGGGAGTTGCTGTCGGCAATGTCAGTATGGAGGAGAAGCAAATCTTCCAAAACGTACAACTCAGTGTTAACTTCCTAGTATCCTTGTTGAAAAAGAACTGGCAGAATGTCAGGTGTTTGTATTTGAAGAGTACCATGGGGAAATCCTACCGTGTCTTTTGA 705 0.417 MPLSNKPYLPSIAASSPTMSKLSSDAVREAISGIVTDSKENNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0008 234 Gene3D - 83 172 IPR016095 -
Lan10g0008 234 CDD Ribosomal_L1 27 233 IPR028364 -
Lan10g0008 234 Gene3D - 40 229 - -
Lan10g0008 234 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 20 232 - -
Lan10g0008 234 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 20 232 - -
Lan10g0008 234 Pfam Ribosomal protein L1p/L10e family 40 228 IPR028364 -
Lan10g0008 234 SUPERFAMILY Ribosomal protein L1 21 234 IPR023674 -
Lan10g0008 234 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 14 234 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Lan10g0008 234 ProSitePatterns Ribosomal protein L1 signature. 134 153 IPR023673 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0008 Lan-Chr10 56066 57980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0008 19 234 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.889 9.77e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0008 K02865 - gmx:100305550 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1841 6 29638602 29640843 Lan10g0008 10 56066 57980 LSH