Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0004 ATGGCTAGGAAAAGTAACCACAAGAACATTACTACTACTCCTTGTTCTAATTCTAACACTACTACACTCACACCCACTAATGTGAAGAAGAAGAAGAAGAGGGCAAGAAAAAGCATTCCTAGAGACCCTCCTTCACAAAGAAGCTCAATCTACCGTGGTGTTACAAGGCATCGATGGACAGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAACAAGAAGGGAAGACAAGTATATCTAGGTGCATATGATGATGAAGAAATGGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTTCCGTTATCAAAATATGAAGACGAGCTTAAGGAGATGGAGGATCAATCCAAAGAAGAATATATTGGATCATTAAGAAGAAAAAGTAGTGGATTCTCTCGGGGAGTCTCAAAATATAGAGGCGTTGCAAGACATCACCACAATGGAAGATGGGAAGCTCGAATTGGAAGAGTCTTCGGAAATAAATATCTATATCTTGGAACTTACGCCACCCAAGAAGAAGCAGCGACAGCATATGATATGGCAGCCATAGAGTACCGTGGACTTAATGCTGTTACAAACTTTGATCTTAGTCGTTATATAAAATGGCTACGTCCTAAAGCACAAGACCAAGAAGAAGATATTATTAATATTAATGAATCAATATCATGCCCTATTACTCCCAACACTGAATTAGATCAACCAAACCCTATTCATGTTCCTATCCCTATTCCTATTCCTATTCCTATTCATGGTGATGAACTTGAAGACGTAGGGTTTGTTTCTCATCATCAACGATCTTCTGTTAGTCATGGCAGTACAAAATCTTATAATTCAGCTCTTGGGCTTCTTTTACAATCATCAAAATTCAAAGAAATGACTTCTTCCTCTTCAGCTTCAGATTATAATAACACTAATCCATCACCTTTGGAGTCAAACTCAAACATTCCTCGTCGCACATTCCCGGAAGATATTCAAACCTTTTTTGAAAGTCATCAAGAAGATTTGGGAAGCTACATTAATGAGAGTGATGACGTTATCTTTGGTGAGTTGAGCTCAATTGCTGCACCAATTTTTCATTGTGAGCTTTAG 1134 0.3898 MARKSNHKNITTTPCSNSNTTTLTPTNVKKKKKRARKSIPRDPPSQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEMAARAYDLAALKYWGQDTILNFPLSKYEDELKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPKAQDQEEDIININESISCPITPNTELDQPNPIHVPIPIPIPIPIHGDELEDVGFVSHHQRSSVSHGSTKSYNSALGLLLQSSKFKEMTSSSSASDYNNTNPSPLESNSNIPRRTFPEDIQTFFESHQEDLGSYINESDDVIFGELSSIAAPIFHCEL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0004 377 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 350 - -
Lan10g0004 377 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 16 350 - -
Lan10g0004 377 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Lan10g0004 377 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
Lan10g0004 377 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 Gene3D AP2/ERF domain 50 119 IPR036955 GO:0003700|GO:0006355
Lan10g0004 377 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Lan10g0004 377 MobiDBLite consensus disorder prediction 309 332 - -
Lan10g0004 377 MobiDBLite consensus disorder prediction 1 50 - -
Lan10g0004 377 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 Pfam AP2 domain 50 108 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Lan10g0004 377 MobiDBLite consensus disorder prediction 1 26 - -
Lan10g0004 377 CDD AP2 49 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0004 Lan-Chr10 21253 25458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0004 46 258 AP2-EREBP Transcription Factor Family AT5G57390 58.475 3.51e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lan10g0004 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0004 K09285 - pop:18097139 447.588