Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0003 ATGAATGTTACCAAAAAATCCTCACTTTCATACACCTCTCTCTATACCAATCCCCTCAATGAGCTCAGGCACAGTCGTAGCTGCAGTGACTATGCTCCCTTACCTTCCTCCAAACCTGAAACCAAACATGACAACAAGGAAAATGTGGTCTCCAACAACAACAACAACAATAATAATAATGGGTCCTCCTCTTGTTCTTCTTCTTCATCATCTTCTCTGCCTCCTAAGCAGTTCTCAAAATCAAAGTCTTTGTCCACTGACAGGAGGAGGATTTTGAAGCCTACCTCCCTTCAGTTATGCATGCAACTAAATGAGCCTCAAAGGGGTTTGGCTTCAAACTTATTGGAACCTCCTTTTGAATCTCACAAATCTACTTCTTTCAATATTTGGGACTTCTCTGACTCTGAGGCTGCTCCTGCTTCTTCCTGGTCCACTTTGCCTAATAAGTCATTGATCTGTAGACAATTGCCTATAGATATTGGAAGGTGTACATGTGTCATTGTGAAGGAAGCATTGCCGCAAGGACTATCTGGTGGCACTTTCTATTCTCTTTACACCTATGAAGGTCATGGAAGGCAGAATAGGAAACTAGCTGTGGCACACCACAAGCGACGGAATGGGAGGTCTCAATTCATTGTAGCACAGAATGTTAAAGGACTAATTTCTAATTCAGATGATGGTTTTCTTGGGACTGTAACAGCTAACCTCATGGGCTCAAAGTACCACATCTGGGATGAGGGTTACTGTCATGATTTACATAGGAAACAACGAAAACCACCTCTTGCTGTTGTAACATACATACCTACAATAGCAACATGTACTGGAAGTCACAGAAGCATGAGGGCCTATATACCCAAGCATCAACCTATCTCACTGAAGAACATGACCCAGGCACAACATATTAAAGGATTGCCAATGGACTGGGAGGGAAAACTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGAGCAGGACTAAGAATCCAAACATCTATAAAAAATTTCCAGTTGACTTCAGAGGAGAATGGGACACAGACGAGCCTGCAGCTAGGTAGGGTTGGGAAATCCAAGTTTGTAATGGACTACAGATACCCTTTGACTGGTTATCAGGCCTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCACAGTCTAA 1218 0.422 MNVTKKSSLSYTSLYTNPLNELRHSRSCSDYAPLPSSKPETKHDNKENVVSNNNNNNNNNGSSSCSSSSSSSLPPKQFSKSKSLSTDRRRILKPTSLQLCMQLNEPQRGLASNLLEPPFESHKSTSFNIWDFSDSEAAPASSWSTLPNKSLICRQLPIDIGRCTCVIVKEALPQGLSGGTFYSLYTYEGHGRQNRKLAVAHHKRRNGRSQFIVAQNVKGLISNSDDGFLGTVTANLMGSKYHIWDEGYCHDLHRKQRKPPLAVVTYIPTIATCTGSHRSMRAYIPKHQPISLKNMTQAQHIKGLPMDWEGKLDKVHQLFSRVPLYNKISKQFELDFRDKGRAGLRIQTSIKNFQLTSEENGTQTSLQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0003 405 Gene3D Tubby Protein; Chain A 147 404 IPR025659 -
Lan10g0003 405 PANTHER TUBBY-LIKE PROTEIN 8 5 403 - -
Lan10g0003 405 PANTHER TUBBY-RELATED 5 403 - -
Lan10g0003 405 MobiDBLite consensus disorder prediction 25 87 - -
Lan10g0003 405 MobiDBLite consensus disorder prediction 48 81 - -
Lan10g0003 405 Pfam Tub family 159 398 IPR000007 -
Lan10g0003 405 SUPERFAMILY Tubby C-terminal domain-like 140 404 IPR025659 -
Lan10g0003 405 PRINTS Tubby superfamily signature 228 252 IPR000007 -
Lan10g0003 405 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Lan10g0003 405 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Lan10g0003 405 PRINTS Tubby superfamily signature 382 404 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0003 Lan-Chr10 17278 20707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0003 42 298 TUB Transcription Factor Family AT1G16070 50.382 5.90e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan10g0003 Tub 2.4e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0003 K19600 - vvi:100248428 515.383