Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0001 ATGCAATTAGCATCAAATGGTGGCAACAAGGATGATGATAATGAAATCCAACCCATCTTGAATCACCATTTCCATTCTCCTGTCGACACAGAAGGAGGAGACTCTTGTTCATTTTCATGTGAAATTATTCCTCCTCCTCCTCTTCTCAACCATGATAATGATGATGATGATGATGATGATTTACATAATGTTCATGTAGATGTTGTTGATGAGACTTGCCATCTTGTAAATTCTTCTGATCACCACCCACAATGCCGTATATGCCTTGATATTGGAGGACAAGATTTAATTGCACCATGCCATTGCAAAGGTACTCAAAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACAAAGGAGGGATTTGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTTTTCATATTACGTGCTAATGTCCCACCTGATCGCTGGTGGTTGAGATTAAAGTTTCAGTTCCTTGTTGCCAGGGATCATGCTTTCATTTTTATAATTGTTCAACTCGTGGTTGCTTTCTTGGGGGTGCTTGTTTACAAATTTTATGGAGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTACACGATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTTTATGGCTTCTTCATAGCCATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAGTTGACAAAGGAATATGTGGTAGAAGATCGTGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTAACAGAACTAAGGATGTTGGGCCTTTACTAA 819 0.3968 MQLASNGGNKDDDNEIQPILNHHFHSPVDTEGGDSCSFSCEIIPPPPLLNHDNDDDDDDDLHNVHVDVVDETCHLVNSSDHHPQCRICLDIGGQDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0001 272 SUPERFAMILY RING/U-box 80 136 - -
Lan10g0001 272 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 271 - -
Lan10g0001 272 CDD RING_CH-C4HC3_MARCH 85 133 - -
Lan10g0001 272 Pfam RING-variant domain 85 132 IPR011016 GO:0008270
Lan10g0001 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 137 IPR013083 -
Lan10g0001 272 ProSiteProfiles Zinc finger RING-CH-type profile. 77 139 IPR011016 GO:0008270
Lan10g0001 272 PANTHER OS02G0132300 PROTEIN 2 271 - -
Lan10g0001 272 SMART ringv_2 84 133 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0001 Lan-Chr10 5327 8105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0001 70 231 C3H Transcription Factor Family AT1G50440 73.457 9.56e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0001 - - lang:109358456 533.872