LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g1706	ATGAACTCTTCTTCCACTAACCTTAACAACAACAATAGTAGTAGTAACATGAGTACTTTGTATAATGATGATACTACTACACTTGATGTTCCTAAGTTCAAGTCTTTTTCACCTCCTTCATTACCCTTTTCTCCATCACCAATTTCACTTTCTTCTTTCTTAGATTTTTCATCAGCTTTCACTCCAACTCATGACTTCTTCAACTCATCTAACTTGTTCCTTAATTCTCCAAATATTTTTGCATCTCATACAAGTGATGTATTTTCTGACCAAAGCTTCAACTGGAGGAACAGTTATGGAGAGGACCAACAACAACATAACAAGGAAGAAGAGAAAAGTTACACTGACTTCTCTTTCCAGACTCAAATAAATCCTGCACCTTCCTCTCAATTTTCCTCAACCATGTTTCAAGTGAAAGAACAAAATAAACAAGACATGTGGAAATTCAGTGAAGCTACAAAGCAAAGTGATTTTACATCTGAGAGGGCACCAACAAAATCTGAATTCACCTCAACTAAGAACTTTTCCTCAGAAATGGAAAGTAATCTTAACTGCACCAATGCATTCCAATCTGCTAGACAACAAAGGAAATCAGAAGATGGATATAATTGGAGAAAATATGGACAGAAACAAGTAAAAGGAAGCGAGAATCCGAGAAGTTATTACAAATGTACTCATCCAAATTGTTCCATGAGGAAGAAAGTTGAAAGATGTTTGGATGGAGAAATCACTGAAATAGTATATAAAGGAAATCATAATCATCCAAAGCCTCAGTCTAATAGAAGAACAAGTTCTCAAAAAATGCATCAGTCTTCATCATCATGCACTAACTCTGGGATTTCTGATCAATCAGTTGTGACACTGCTAGGGAATAATCCACAAATTGAGACTGTTTCTATACAACAAGATTCTTATGCTTCTGTGGAAGAGGAAGAGTTTGAGCAAACATCACAAACTAGTCATTCTGAGGGAAATGAAGTTGAACTTGGTCCAGATGCTAAAAGATGGTATGATAAGCAACTCACAGGAGAGAATGGAAATGAGGGATATTTTAGCTCAGGGAGTAGAACTATTAGGGAGCCTAGAGTTGTTGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGTTATAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATACAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCCGTGCACGATGTTAAAGCAGTGATCACAACATATGAAGGGAAACACAACCATGATGTACCCGCGGCACGCGGAAGCACAGGATACAGAAATTCTATGAACTGCAACACCAGCAATGTGCTGGCGGGGCCTGCGCCTATAAGGCCATCGGCTGTGACTGGTTATTCAAACACATCAAGTTTCACAAACTCACTTTACAAACCTACAAGTGGAAGTCAAGAATCATTTGCATTGGACATGCTGCAAAGCTCTGGAAGTTTTGTTTTTCAATCTCTTGCACAATACTCTGATGCTGCATGCTCTAAGGCTAAGGATGACTCATTCCTTCAGTCATTCATGTCAAAGAATTGCTAA	1593	0.381	MNSSSTNLNNNNSSSNMSTLYNDDTTTLDVPKFKSFSPPSLPFSPSPISLSSFLDFSSAFTPTHDFFNSSNLFLNSPNIFASHTSDVFSDQSFNWRNSYGEDQQQHNKEEEKSYTDFSFQTQINPAPSSQFSSTMFQVKEQNKQDMWKFSEATKQSDFTSERAPTKSEFTSTKNFSSEMESNLNCTNAFQSARQQRKSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCSMRKKVERCLDGEITEIVYKGNHNHPKPQSNRRTSSQKMHQSSSSCTNSGISDQSVVTLLGNNPQIETVSIQQDSYASVEEEEFEQTSQTSHSEGNEVELGPDAKRWYDKQLTGENGNEGYFSSGSRTIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNTNARSYYKCTAPGCSVRKHVERAVHDVKAVITTYEGKHNHDVPAARGSTGYRNSMNCNTSNVLAGPAPIRPSAVTGYSNTSSFTNSLYKPTSGSQESFALDMLQSSGSFVFQSLAQYSDAACSKAKDDSFLQSFMSKNC	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g1706	530	MobiDBLite	consensus disorder prediction	249	280	-	-
	Lal9g1706	530	Gene3D	WRKY domain	359	435	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	Gene3D	WRKY domain	183	258	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	ProSiteProfiles	WRKY domain profile.	369	434	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	Pfam	WRKY DNA -binding domain	375	431	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	Pfam	WRKY DNA -binding domain	199	255	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	MobiDBLite	consensus disorder prediction	300	332	-	-
	Lal9g1706	530	ProSiteProfiles	WRKY domain profile.	199	257	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	SUPERFAMILY	WRKY DNA-binding domain	366	434	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	MobiDBLite	consensus disorder prediction	253	280	-	-
	Lal9g1706	530	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lal9g1706	530	SUPERFAMILY	WRKY DNA-binding domain	195	257	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	304	528	-	-
	Lal9g1706	530	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	17	285	-	-
	Lal9g1706	530	MobiDBLite	consensus disorder prediction	153	174	-	-
	Lal9g1706	530	SMART	WRKY_cls	198	256	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	SMART	WRKY_cls	374	433	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal9g1706	530	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	17	285	IPR044810	GO:0003700
	Lal9g1706	530	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	304	528	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g1706	Lal-Chr9	19309024	19312213	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g1706	177	526	WRKY Transcription Factor Family	AT2G38470	49.869	1.00e-100	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lal9g1706		WRKY	8.3e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g1706	K13424		-	gmx:100792833	607.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g1706	9	19309024	19312213	Lal9g1706	9	19309024	19312213	ECH