Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1696 ATGCTATGTTGCTGCAGATATAAGAAATCGCGCAAGAGGCGCGGTGGTGGAAGTGATTCAGTTGAAGACACACTTGAGAAATGGAAGAATTATAACAAGCAAAAGCAAGTTGGATGTGAAGAAAATGGGGTGGAAAAAGTGATTCACAAAGTTCCTGCAAAAGGCTCTAAAAAGGGTTGTATGAGAGGTAAAGGTGGTCCTCAGAACTCAGATTGCAACTTCAGAGGTGTGAGACAAAGGATTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCTATCAATGGTGGTAACAACAACCATGTTGGTAAGAAACCAACTAGGCTTTGGCTTGGTACTTTCACAACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGATCATGTATGGTCCTTGTGCGCGGTTGAACTTTCGTCATTGTTCTAATGTTCATTCCATAGCCTCTGATGGATCATCATCATCTACTGCATGTGATGAAAAATCGCCTAGTGACAATTCTGCAGATACTTTGAATGGTGATGAACTTGCAAAAGCTGAAGACAAACCCAACTTTTTTGAGGTTGGTGTCTTTGAGGAAACTGAGGAAAAACATGTTCTTGTCCAATGTGCAACAAATAAGGAATGTAGGACAAGAATTCATCAAGGGATACAGAGAGAATCGGAGAAGGTTTTGAAAAATTATGGCATAGATGGAGAGGATAATCACATGGAGAAGGAGCCTATTGATATGGATATGATCATGAAAACAAGAGCTGATGGTAGCACTTGTGGAACTAATGAACATGGTATTATGATAAAGAGTGAAGAAACAACAGGAGAATCCTGCATCAACCATTGTCTTGGGTACTTGCATAATATGCTGTCAGATGAGGGCTGCAATCCAAGACCAAGTTGTGAGCATTTTGATAGCATCACGACCGAAACAGATGATTCTATCACGAAGAAACATATGGAGGAAGTAATTTCTGAAATTATGCAACTTTGTAGCAGCAAGTGCTCAAAGATCAGTAATATTCAGCCACAAAATGAACATTATAAATATAAACATGTTGATGGGATGAAAAATGAGCATAAGGGTTTGGATAGTATGCAGTTTGCAGACTATGACATTGGTAATGATTACAGTTTCTTAAGTCCTGACTATGATTTTGGCTTATTGGAAGAGAAGAAGTTACTTGATATATGTTTTTCACATGTAGGATCTTAA 1212 0.3894 MLCCCRYKKSRKRRGGGSDSVEDTLEKWKNYNKQKQVGCEENGVEKVIHKVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGGNNNHVGKKPTRLWLGTFTTAHEAALAYDEAAKIMYGPCARLNFRHCSNVHSIASDGSSSSTACDEKSPSDNSADTLNGDELAKAEDKPNFFEVGVFEETEEKHVLVQCATNKECRTRIHQGIQRESEKVLKNYGIDGEDNHMEKEPIDMDMIMKTRADGSTCGTNEHGIMIKSEETTGESCINHCLGYLHNMLSDEGCNPRPSCEHFDSITTETDDSITKKHMEEVISEIMQLCSSKCSKISNIQPQNEHYKYKHVDGMKNEHKGLDSMQFADYDIGNDYSFLSPDYDFGLLEEKKLLDICFSHVGS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1696 403 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lal9g1696 403 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Lal9g1696 403 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 310 - -
Lal9g1696 403 SUPERFAMILY DNA-binding domain 73 140 IPR016177 GO:0003677
Lal9g1696 403 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
Lal9g1696 403 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
Lal9g1696 403 CDD AP2 72 141 IPR001471 GO:0003700|GO:0006355
Lal9g1696 403 MobiDBLite consensus disorder prediction 151 173 - -
Lal9g1696 403 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Lal9g1696 403 MobiDBLite consensus disorder prediction 151 172 - -
Lal9g1696 403 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 310 - -
Lal9g1696 403 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1696 Lal-Chr9 19256791 19258002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1696 11 158 AP2-EREBP Transcription Factor Family AT2G40340 51.678 6.55e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g1696 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1696 - - lang:109361039 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1696 9 19256791 19258002 Lal1g2255 1 24522266 24524344 LSH