Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1670 ATGCGCAAGTCTTTCAAAGATTCTCTCAAAGCTCTTGAAGCTGATATTCACTTTGCCAATACACTAGCTTCCGATTATGCAAGTGACCGTGACGGCACCTGCCTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAGTTTTTCCTTTTTTTGGTTCAGTGGACTGATTGTCACCTTGCTGGGTCCTTAGGAATGCTTAGAATTCTTATATACAAGGCATATAAGGATGAGAAAACAACCATGTCTATTTACAAAAGGAAAGCCAGTCTGAAGGAATTCTATGGTCTTACTAGATCTCCAGATAGACCAAAAGATCGAATGTTCGATTCCTGTGTAGTGTTTCCTTCTTTATTGCAACTGCACAGAGGAATAACTGATATTGATGACAGGAAACAGAAACATATATGTGCTACCAAGTACAAGGCTAAAGATGTGATGAACAAAGGAAAACTCTCTGAAATTGATGCTGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATTAACACTAAGGTTGTGTTGCCCAATTGCAATCATTCAATGTGTTTGAAATGCTACAATGATTGGCATGGAAGATCACAATCATGCCCTTTCTGCCGTGATAGTCTTAAAAGAGTGAAATCTGGGGACCTTTGGATCTACATGAGCAACAATGACATAGTTGATTTGACTTCAATCAATAAGGAGAATTTGAAGAGACTATTTATGTACATAGAAAAATTGCCTCTCATTCTGCCTGACCCTATATTCATCTCATACCATCAGTACTGGTGA 774 0.3915 MRKSFKDSLKALEADIHFANTLASDYASDRDGTCLQMRLSYSPAAQFFLFLVQWTDCHLAGSLGMLRILIYKAYKDEKTTMSIYKRKASLKEFYGLTRSPDRPKDRMFDSCVVFPSLLQLHRGITDIDDRKQKHICATKYKAKDVMNKGKLSEIDAEREEECGICMEINTKVVLPNCNHSMCLKCYNDWHGRSQSCPFCRDSLKRVKSGDLWIYMSNNDIVDLTSINKENLKRLFMYIEKLPLILPDPIFISYHQYW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1670 257 Pfam Zinc finger, C3HC4 type (RING finger) 159 205 - -
Lal9g1670 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 255 - -
Lal9g1670 257 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Lal9g1670 257 SMART ring_2 162 199 IPR001841 -
Lal9g1670 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 210 IPR013083 -
Lal9g1670 257 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Lal9g1670 257 PANTHER RING FINGER PROTEIN 41, 151 1 255 - -
Lal9g1670 257 SUPERFAMILY RING/U-box 149 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1670 Lal-Chr9 19005703 19008882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1670 109 211 C3H Transcription Factor Family AT5G01960 27.778 8.91e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1670 K25840 - pop:7466068 400.593