Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1665 ATGGTGCAACCACATTCCATGGCCACTCCTTCTTCCAACTCCTCCAATGAACATGAACAGAGTATCATCAACCAAAGAAGAACACTTCAATCCATTCTTTGTGCTGAAACCTTCTCACGCTTCACCCTTTTCTTCTTTGTTGCAATGGCAATGATACTTGGGGTTTATGGGTCGAGGAACCTTGGACAAGAATCTTCCATTGTGTTTCAATCTAGCCCTTTGTTTTTACAATATGTGGAGGTAGAGAACTTAGACTCAAAGCCAGGACCTATGCTGTATGGTTCATATACATATCCACCTTTTGATGTTTTCACTAAGGCAAAGGTTGAAGGCCTAACTGAGTGGTTGGAGCACCCAACATTTCCTAACACAACTCTGTCATGGAACATTATCCTTGGAACTGGTACGATTACGCAGGAAATATTCGAGTCGTCGGGATATTGTGTGGCATTAGTTTCACATGTTACCATTTCTGATACATCTCTTCCTACAGTTGGAGTGACTTTGCTTATGTTTTGGTGCTTCAACTTCTTGAACAAGTTCCGAAGTGCCCGCGAAGATAGAGTTAGATACGAGGAAGCAGCACGCGAAGATGATGATGATCCTCCAAGTTCTGGCTCATCATATAATTCCATGTCACAGGGTGATGAAGATGTTGACTTTACCATTGATGGGAATTCTTTAGGGAATGATGAAGCCAGTATTAATAGCCGTCGGCTTTGCGCAATCTGTCTTGATGCTCCAAGGGAATGCTTCTTCCTTCCATGTGGTCATTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGAAGAGGCTTCTGCCACTTGCCCTGTTTGTAGGAGGAACATCAAGAAGGTGAGGAAGATTTTCACTGTATGA 879 0.43 MVQPHSMATPSSNSSNEHEQSIINQRRTLQSILCAETFSRFTLFFFVAMAMILGVYGSRNLGQESSIVFQSSPLFLQYVEVENLDSKPGPMLYGSYTYPPFDVFTKAKVEGLTEWLEHPTFPNTTLSWNIILGTGTITQEIFESSGYCVALVSHVTISDTSLPTVGVTLLMFWCFNFLNKFRSAREDRVRYEEAAREDDDDPPSSGSSYNSMSQGDEDVDFTIDGNSLGNDEASINSRRLCAICLDAPRECFFLPCGHCVACFACGTRIEEASATCPVCRRNIKKVRKIFTV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1665 292 ProSiteProfiles Zinc finger RING-type profile. 241 280 IPR001841 -
Lal9g1665 292 MobiDBLite consensus disorder prediction 192 216 - -
Lal9g1665 292 PANTHER OS05G0521000 PROTEIN 164 292 IPR044586 GO:0004842
Lal9g1665 292 PANTHER OS05G0521000 PROTEIN 110 151 IPR044586 GO:0004842
Lal9g1665 292 PANTHER OS05G0521000 PROTEIN 40 105 IPR044586 GO:0004842
Lal9g1665 292 MobiDBLite consensus disorder prediction 1 21 - -
Lal9g1665 292 SMART ring_2 241 279 IPR001841 -
Lal9g1665 292 Pfam Zinc finger, C3HC4 type (RING finger) 238 286 - -
Lal9g1665 292 SUPERFAMILY RING/U-box 240 286 - -
Lal9g1665 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 292 IPR013083 -
Lal9g1665 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 110 151 - -
Lal9g1665 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 40 105 - -
Lal9g1665 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 164 292 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1665 222 289 C3H Transcription Factor Family AT3G06140 30.882 6.71e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1665 - - lang:109359922 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1665 9 18957958 18960750 Lal9g1665 9 18957958 18960750 ECH