Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1663 ATGGAAATGGCTTCTAGCCCTCGCACCGTTGAAGAGATCTTCAAAGACTTTAGCGCTCGAAGAACCGGTGTTGTTCGTGCTTTGACTCATGATGTTGATGAATTTTATGGTCTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTACGGACATCCGAATGAAACATGGGAAGTGACTCTGCCAGCAGAGGAAGTTCCACCTGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGTATGAACCGCAGGGACTGGCTGTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCAGTGGCATTTTATCTTGGGGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCCACAGTTTTTGAAGTTGTTACTGACAGGAAACCAATTAAGGAAAAGCCCACTGTGGATAGTGGAAGCAAATCTCGAGGTAGCACCAAGAGATCTAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGATGAGGGGTATGAGGAGGAAGAAGATGAGCATAGTGAAACCCTTTGTGGTAGCTGTGGCGGCAATTACAACGCCGCGGATGAATTTTGGATTGCCTGTGATATATGTGAGAGGTGGTTCCATGGAAAATGTGTGAAGATGACCCCTGCAAAGGCTGATAGCATAAAGCAATACAAGTGCCCTGCCTGCAGCTTAAGGCGGGGCAGGCCTTAA 720 0.4625 MEMASSPRTVEEIFKDFSARRTGVVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKEKPTVDSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEEDEHSETLCGSCGGNYNAADEFWIACDICERWFHGKCVKMTPAKADSIKQYKCPACSLRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1663 239 MobiDBLite consensus disorder prediction 140 173 - -
Lal9g1663 239 ProSitePatterns Zinc finger PHD-type signature. 185 232 IPR019786 -
Lal9g1663 239 CDD PHD_AL_plant 184 235 IPR044104 -
Lal9g1663 239 SMART PHD_3 184 233 IPR001965 -
Lal9g1663 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Lal9g1663 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lal9g1663 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 233 IPR013083 -
Lal9g1663 239 ProSiteProfiles Zinc finger PHD-type profile. 182 235 IPR019787 -
Lal9g1663 239 MobiDBLite consensus disorder prediction 148 162 - -
Lal9g1663 239 Pfam PHD-finger 185 233 IPR019787 -
Lal9g1663 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Lal9g1663 239 SUPERFAMILY FYVE/PHD zinc finger 173 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1663 Lal-Chr9 18946695 18950792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1663 4 238 Alfin-like Transcription Factor Family AT5G05610 76.793 2.52e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal9g1663 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1663 - - gmx:100793126 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1921 2 21427295 21431418 Lal9g1663 9 18946695 18950792 LSH