Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1656 ATGACGAAAGGCAAGGGAGAAGCGAGGAAATCGAAGGAAGCATTGAAGCCTGTTGATGACCGACAGGTAGGAAAGCGAAAGGCTGCTTCTAAACCCGAAAAGAGGATCGTGCAAAAGTCAAAGAAGGCTAAGAAAGATCCCAACAAGCCAAAAAGACCTCCCAGTGCTTTCTTCGTCTTCCTCGAGGAGTTCAGGAAGACCTTTAAGGCAGAAAATCCTAATGTGAAAGCTGTATCAGCTGTTGGAAAAGCCGGAGGAGAGAAATGGAAATCGCTGACTAAGGCCGAGAAAGCTCCATATGAAGCTAAGGCTGCAAAAAGGAAAGTTGAGTACGAAAAACTTATGAATGCCTATAATAAAAAGCAGGCAAGTTCAGCTAATGATGGAGATGATGAATCAGACAAGTCCAATTCCGAAGTAAACGATGAAGAGGATGATTCGAGTAGAGAGGATGGCCACAAAGACGATGAAGATGATGAAGATGAGGATGATGAGTGA 498 0.4398 MTKGKGEARKSKEALKPVDDRQVGKRKAASKPEKRIVQKSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNKKQASSANDGDDESDKSNSEVNDEEDDSSREDGHKDDEDDEDEDDE 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1656 165 MobiDBLite consensus disorder prediction 1 40 - -
Lal9g1656 165 SUPERFAMILY HMG-box 41 122 IPR036910 -
Lal9g1656 165 MobiDBLite consensus disorder prediction 135 165 - -
Lal9g1656 165 SMART hmgende2 49 120 IPR009071 -
Lal9g1656 165 Pfam HMG (high mobility group) box 50 119 IPR009071 -
Lal9g1656 165 MobiDBLite consensus disorder prediction 1 54 - -
Lal9g1656 165 Gene3D High mobility group box domain 34 135 IPR036910 -
Lal9g1656 165 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 161 - -
Lal9g1656 165 CDD HMGB-UBF_HMG-box 50 115 - -
Lal9g1656 165 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 50 119 IPR009071 -
Lal9g1656 165 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 161 IPR031061 -
Lal9g1656 165 MobiDBLite consensus disorder prediction 120 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1656 Lal-Chr9 18907214 18910984 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal9g1656 HMG_box 2.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1656 K25507 - egr:104419103 223.787