Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1654 ATGATTAGTAATTGCTTTGGTGCCTTCAATTGGTGTAAAGGGAAAGATGGTGTTGATGATCAACCACAAGAACAAGTGATTAAAACCACAACATTTAGCTATAACTCATTGAGATCGGCAACCGGAGATTTTCATCCTTCAAGTAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGCTTTAAGAGATGGTACACAAGTTGCTATTAAGTCTCTTTCTGTGGACTCTAAACAAGGAAGCCATGAATTCATGACAGAAATTAATATGATATCAAATATACGTCATCCAAATCTGGTTGAGCTAATTGGATGTTGTGTTGAGGGTAGTCATCGAATATTGGTTTACGAGTTTATGGAGAACAATAGCCTTGCCAGTTCCTTGCTTGGTCCCCGAAGTAAATATATTCCGCTGGATTGGCCTAAGAGAGCTGCTATCTGCCATGGCACAGCTTCTGGTCTTAGGTTTCTTCATGAAGAGGCTCAACCGAACATTGTTCACAGAGATATCAAGGCTAGCAACATACTTCTGGATGGGAACTTTAATCCTAAAATTGGCGATTTCGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGTGTTGCAGGCACGCTGGGATATCTTGCACCAGAGTATGCACTTCTAGGACAGCTTACAAAGAAAGCAGATGTATATAGTTTTGGGGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGCAGCAAAGCAGCATTTGGAGATAATCTCTTGGTTCTTGTAGAATGGAATCTCTATTATAAAATGCTGCTTAGTCCTATGTATGGTTTATTAGCCAGAACAGAAAAAACAAGGCCAGAAAACAACCCCTTGACCGAGACAACAAATGTCATTGGCTTGGTCAGGGCCAGCCAAAATGATGCAACATGCCCAGGCACGAAGGCCAACCTGCCTCGGTCAGCAGCTAGCAATGGCAAGGCCATAGGCGCCATCCTGCCTCGGTCAACAGCTAGCAATGGCAAGGCCATAAGCCAAGGCTGGCACGGTCAGCCTGGCTCAGCCAAAAGCTAA 1062 0.4322 MISNCFGAFNWCKGKDGVDDQPQEQVIKTTTFSYNSLRSATGDFHPSSKIGGGGYGVVYKGALRDGTQVAIKSLSVDSKQGSHEFMTEINMISNIRHPNLVELIGCCVEGSHRILVYEFMENNSLASSLLGPRSKYIPLDWPKRAAICHGTASGLRFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTLGYLAPEYALLGQLTKKADVYSFGVLMLEIISGKSSSKAAFGDNLLVLVEWNLYYKMLLSPMYGLLARTEKTRPENNPLTETTNVIGLVRASQNDATCPGTKANLPRSAASNGKAIGAILPRSTASNGKAISQGWHGQPGSAKS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1654 353 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 266 - -
Lal9g1654 353 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Lal9g1654 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lal9g1654 353 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 266 - -
Lal9g1654 353 SMART serkin_6 44 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1654 353 SUPERFAMILY Protein kinase-like (PK-like) 25 267 IPR011009 -
Lal9g1654 353 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Lal9g1654 353 Pfam Protein kinase domain 45 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1654 353 Gene3D Transferase(Phosphotransferase) domain 1 120 296 - -
Lal9g1654 353 ProSiteProfiles Protein kinase domain profile. 44 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1654 Lal-Chr9 18884248 18889887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1654 5 260 Receptor kinase-like Gene Family AT1G53420 52.692 8.08e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal9g1654 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1654 - - gmx:100816683 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1654 9 18884248 18889887 Lal9g1654 9 18884248 18889887 ECH
Lal2g1913 2 21350169 21352823 Lal9g1654 9 18884248 18889887 LSH