Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1638 ATGTCAAATTTGCACATGTCTCATGTTGATTTAGAGCAAGGACATAATCGTCATTCTGTTGTTGGAAGTGATGTGAGTGTTGAAGTTGGGAGCCAATGCTTCTCTGATGCAGATGATGGTTCTTGTTACTCTCATTTCTATTCAATAAATGGTGGTGAGTGTGATGATTATAGCTTTGATTGTGTTTCTGATATTGAGGTTGAGGGTGTTGTTGATTCTGGGAGAGTTTCTTCTGTCACTGATTGTTCTGTAGAGGTTGAAATTGCAAGTATGGTTCCTGAGATTAAGGTGCATTTGGGTAATAAAGTGGACAAAGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAATCTGGAGTTCCAATTGTGTTGGGTTGTTCTTGTAAAGATGATTTAGCTGCAGCTCACAAGAACTGTGCTGAAACCTGGTTCAAGATTAAGGGTAATAGGACTTGTGAAATTTGTCAATGTGTTGCACAAAATGTTTTTGGACCAAATGAGGAACCAACCGAGCATTCGAGTAACTACGCAATTACAGCAGCTATACTCTCAGTACCGGCTCCTCCACCCGAGCCTCCCAGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTCGCTTGTATAGTTTTTATATTTGTCATATCGTGGCTTTTTCGCATTAAAGTGCCTACTTCCTAA 690 0.4043 MSNLHMSHVDLEQGHNRHSVVGSDVSVEVGSQCFSDADDGSCYSHFYSINGGECDDYSFDCVSDIEVEGVVDSGRVSSVTDCSVEVEIASMVPEIKVHLGNKVDKDCRICHMGLESDSHESGVPIVLGCSCKDDLAAAHKNCAETWFKIKGNRTCEICQCVAQNVFGPNEEPTEHSSNYAITAAILSVPAPPPEPPRFWHGHRFLNFLLACIVFIFVISWLFRIKVPTS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1638 229 PANTHER ZINC FINGER, RING-CH-TYPE 5 227 - -
Lal9g1638 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 166 IPR013083 -
Lal9g1638 229 CDD RING_CH-C4HC3_MARCH 107 159 - -
Lal9g1638 229 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Lal9g1638 229 PANTHER OS01G0850200 PROTEIN 5 227 - -
Lal9g1638 229 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Lal9g1638 229 SUPERFAMILY RING/U-box 103 162 - -
Lal9g1638 229 SMART ringv_2 106 159 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1638 Lal-Chr9 18783854 18787370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1638 66 229 C3H Transcription Factor Family AT5G05830 55.090 6.29e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1638 - - gmx:100808666 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1638 9 18783854 18787370 Lal18g1350 18 15923461 15925499 ECH
Lal9g1638 9 18783854 18787370 Lal22g0243 22 1515215 1517568 ECH
Lal9g1638 9 18783854 18787370 Lal2g1085 2 7644025 7649673 ECH
Lal9g1638 9 18783854 18787370 Lal9g1638 9 18783854 18787370 ECH
Lal2g1884 2 21128523 21131437 Lal9g1638 9 18783854 18787370 LSH