Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1621 ATGGCTCATGAGGGTTTTGAATCCTACCATGTTCCCCAACAAAGCAGAAGAGAAAAGCTTAGAGTTCTAGCTCTGAACCAACCTACCCTTGTTGCTGAATCTACTTCTTTATTCCCTCTCTACGATCCTTCACCTATTCCATCGGATTTGTTAACTTGTCCTAACCAACAAAGTCCCATGATGTTTCATAATAATAACCACAACACCCATGTTCCATTTCCTAAAGAAAACCAAGGTTGTAGTAGTGGCGTGAAGGAAGAAGGTTCCAATTTTATGACCGTGTTTTCAAGGGCTGTGAATCCTTCTTCTTGTTCTTCTTCATCTTCATACTTGGATCCTTCAATTCAAGTTATCAACCACAACCCTTTTCTTTATAATAACCAACCTCAAAGCTTTCAAAACCTTAGCAGTAGTGAAATGATGGTGTTTAAGCCTGAACCATTGTCTTTGTCTCTCTCATCTCACAACAACAACAACAACAACAACAACAATACTCATTACCCATATGGTTGTGCCTCTAATGAAGTTTTTTCAAGGAACACAGTTCCACTTGGACCATTTACTGGTTATGCCATGATATTGAAGGGATCTAGGTTCTTGAAGCCTGCACAGCAATTATTAGAGGAGGTATGTGATGTTGGGGTTCGTGGAATTTACACAGAGAAGATTACTTCTGATGTTGATGCAGCTTTGATGGAACCTCCTCCTATGGAGAATTTAAGTACTGGTGGAATAGTTGGTGTGGATGAAGATGCAATTGGGGATGGAAATGAAAGTAGGAAGAAGAAGCCAAGGTTATTAACCATACTTGATGAGGTTTACAGGAGGTACAAGCAATATTATCAACAGATGCAAGCAGTAGTAACTTCATTTGAATGTGTGTCTGGCCTCGGTAACGCAGCACCATATGCATGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATATAATAATTGACCAGCTTCAGTTTCTCAATAAGACTCAGTTTCAGATCAGCAATAACAGGAAAGATGAATCTCCAAGGTCTCGAAACACCAACGATAGAGGAGGCTCTTACAGCCAAAGACAGCCTGGGTTTCTTGAGCATCAACAACCGGTTTGGCGACCTCAAAGAGGACTTCCGGAGCGCGCTGTCAGTGTTCTCAGGGCATGGTTGTATGATCACTTTCTTCACCCTTATCCTACTGATACTGACAAGTTAATGTTGGCTAAACAAACTGGTTTATCTCGTAGTCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAATCACAGCAAGCTCAAAGTAAATCACAAAGAAATGAACATAGTAGGAACAAGTTGATTCATAATCATGGTTCACTTGTTACTCATGAGAATCCATCTACCTCCACTACTAGAAATGAATTTCCTAACACAAGCAACCAGCAAGTGGGCATGCATGGTAGTGTTAATGGTGCAAGCAATGGTAATGGTGTCTCACTTACACTTGGTCTTCATCAAAATCACGGGATCGGATTATCTGAACCCTTTCCTATGAATGCAGCTCAACGTTTTGGTCTTGCCCTTGATCATGAAGGTTGTGTTATAAGCGGTTTTGAATCACAAAATCGGCATTTTGGAAGAGATGTTATTGGAGGGCAACTTTTGCATGACTTTGTTGGCTGA 1701 0.4045 MAHEGFESYHVPQQSRREKLRVLALNQPTLVAESTSLFPLYDPSPIPSDLLTCPNQQSPMMFHNNNHNTHVPFPKENQGCSSGVKEEGSNFMTVFSRAVNPSSCSSSSSYLDPSIQVINHNPFLYNNQPQSFQNLSSSEMMVFKPEPLSLSLSSHNNNNNNNNNTHYPYGCASNEVFSRNTVPLGPFTGYAMILKGSRFLKPAQQLLEEVCDVGVRGIYTEKITSDVDAALMEPPPMENLSTGGIVGVDEDAIGDGNESRKKKPRLLTILDEVYRRYKQYYQQMQAVVTSFECVSGLGNAAPYACLAINAMSKHFRCLKNIIIDQLQFLNKTQFQISNNRKDESPRSRNTNDRGGSYSQRQPGFLEHQQPVWRPQRGLPERAVSVLRAWLYDHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLESQQAQSKSQRNEHSRNKLIHNHGSLVTHENPSTSTTRNEFPNTSNQQVGMHGSVNGASNGNGVSLTLGLHQNHGIGLSEPFPMNAAQRFGLALDHEGCVISGFESQNRHFGRDVIGGQLLHDFVG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1621 566 SUPERFAMILY Homeodomain-like 374 439 IPR009057 -
Lal9g1621 566 SMART prehox3 188 324 IPR006563 -
Lal9g1621 566 Pfam Associated with HOX 193 322 IPR006563 -
Lal9g1621 566 SMART HOX_1 372 436 IPR001356 GO:0003677
Lal9g1621 566 Pfam Homeobox KN domain 389 428 IPR008422 GO:0003677|GO:0006355
Lal9g1621 566 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 27 543 - -
Lal9g1621 566 Gene3D - 375 437 - -
Lal9g1621 566 ProSiteProfiles 'Homeobox' domain profile. 369 432 IPR001356 GO:0003677
Lal9g1621 566 CDD homeodomain 372 433 IPR001356 GO:0003677
Lal9g1621 566 MobiDBLite consensus disorder prediction 466 500 - -
Lal9g1621 566 MobiDBLite consensus disorder prediction 337 361 - -
Lal9g1621 566 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1621 Lal-Chr9 18562560 18568567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1621 135 566 Homeobox Transcription Factor Family AT5G02030 49.692 4.24e-129 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal9g1621 POX 4.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1621 - - vun:114185080 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1621 9 18562560 18568567 Lal9g1621 9 18562560 18568567 ECH
Lal2g1871 2 20982192 20987284 Lal9g1621 9 18562560 18568567 LSH