Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1608 ATGAGTTCCTCTAACCTAACTTCTTCACAAACTAATAATTATCCTTCTTCCTATGATGAATCATCATGGGAAGAAAAAGCTTTTGCAAAAGATGCATCTGGGTTTGGTTGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGAGATAGAGCAAGACTAAATCAGCATCAACCAACTAGTCCTCAACAAAATGAAACTCTGAGTCTTGTTCAAAATCCTTTAAACTCAGGTTACATATACTCATCTTCTCTTTGTGGATTGGCCAATACCAACAACAACATCACTAACCCTAATTATTCTGATCCTCCTCATGTTATTGCTTCATCTTCTATGGTTTTAACCCCATCATTTAATAAGGATTTTAGAGAGGAAACAAGCCAGAATATTCCACTTTATAATTCTTCTATTTTCCATAAGTCTTCTAACATTTCTTCTAAATCCTTGTCAAATCTATCTGAATCTGGTGTTGATAGAATCTCTAAGGGATTGGATAATGACCATAAAACTGATGTGGCTGTGAGCATGAACCTGAACTTGTTTGTGTGTAGAGATTACACACCTATGCAGTTTGAGACTAAAGAGGAAGATTTAATCAGTTTCAAGAAGAGGAGAAAAGATGCATCAGTTCCATTCTTCCCAAAACAAAGCTCAGATGATACAATTCATATGCAGTCACAGATGTTTGAATTTAGCCCTAACTCCATTGAAGAGCTGGATCTGGAGCTTAGGCTTGGTTATAGGCCAAAGGTATAG 813 0.3715 MSSSNLTSSQTNNYPSSYDESSWEEKAFAKDASGFGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLNQHQPTSPQQNETLSLVQNPLNSGYIYSSSLCGLANTNNNITNPNYSDPPHVIASSSMVLTPSFNKDFREETSQNIPLYNSSIFHKSSNISSKSLSNLSESGVDRISKGLDNDHKTDVAVSMNLNLFVCRDYTPMQFETKEEDLISFKKRRKDASVPFFPKQSSDDTIHMQSQMFEFSPNSIEELDLELRLGYRPKV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1608 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Lal9g1608 270 Pfam C2H2-type zinc finger 44 68 - -
Lal9g1608 270 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Lal9g1608 270 PANTHER OS07G0101800 PROTEIN 8 270 - -
Lal9g1608 270 SMART c2h2final6 44 66 IPR013087 -
Lal9g1608 270 Gene3D Classic Zinc Finger 41 94 - -
Lal9g1608 270 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 8 270 - -
Lal9g1608 270 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1608 Lal-Chr9 18391955 18392767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1608 20 75 C2H2 Transcription Factor Family AT2G37740 80.357 1.34e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g1608 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1608 - - gmx:100810800 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1608 9 18391955 18392767 Lal6g0271 6 1772801 1774065 ECH
Lal9g1608 9 18391955 18392767 Lal18g1339 18 15840555 15841379 ECH
Lal9g1608 9 18391955 18392767 Lal9g1608 9 18391955 18392767 ECH
Lal9g1608 9 18391955 18392767 Lal1g2200 1 23972793 23975728 LSH