Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1606 ATGGCTTCGCTTAGAGAATCTTCATTCTGGTGTTACACATGCAATCGAATCGTTAGGGTTCCATTAATCGCCGATCAAAATTCTCCCTTCTGCCCCTATTGCACTACCGGATTTCTCGAAGAACTCACAAACCCTAATTTCTCCGATCACGGCGGTAACACGAGGACCACCACTCCCACAGGCAGCGGTGACCGATCGCCGTTCAACCCCGTGATCGTCCTCCGCAACGGAAACGACGTCGTTTCATCTTCCTCAGAAAGACGCAGCTTCGAACTCTATTACAACGACGTCGTTTCCGGATCAGGTCTTCGTCCATTACCCGCTACCGTAACCGAGTTTTTAATGGGTTCAGGGTTCGACCATATCCTGAACCAGCTCACTTATTTAGAAGGAACACCGGTTCAATTATCGGACCGGTCTTTTTACCCGATAGCGGCATCGAAAACCGCTATCGAGTCAATGCCAGTTGTTAAAATAATTCCAACACATGTGAAAGCCGAATCGCAATGTGTCGTTTGCATGGAACCTTTCGAGCTCGATTGCGATGCTCGAGAGATGCCATGCGGCCACATTTACCACTCCGGCTGCATCCTCCCTTGGCTATCAGTGCGGAACTCGTGCCCTGTGTGTAGGCATGAGCTCCCTACCGAGGGAACAGGGGAGGATGCTGCGGGGTTGATCATATGGAGACTCCCTGGAGGAGGGTTTGCTGTGGGGAGGATCTCATGGGAGTCTAGTTTGGGTAGAAGAAGATCAAGGGAGAGAAGAGGATTTGGCGGTGTATTGCGCAGCGTTTTCTCGTATGTTCGGAGAGTTAGGAGTTCAGTTTCGAGTAATTTGGGGATTGGTGAAAGATCTAGGTCTAGCACTGTGCTCTCTAGATTGTCAAGGAGGGGCAGTTAG 903 0.5039 MASLRESSFWCYTCNRIVRVPLIADQNSPFCPYCTTGFLEELTNPNFSDHGGNTRTTTPTGSGDRSPFNPVIVLRNGNDVVSSSSERRSFELYYNDVVSGSGLRPLPATVTEFLMGSGFDHILNQLTYLEGTPVQLSDRSFYPIAASKTAIESMPVVKIIPTHVKAESQCVVCMEPFELDCDAREMPCGHIYHSGCILPWLSVRNSCPVCRHELPTEGTGEDAAGLIIWRLPGGGFAVGRISWESSLGRRRSRERRGFGGVLRSVFSYVRRVRSSVSSNLGIGERSRSSTVLSRLSRRGS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1606 300 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Lal9g1606 300 CDD RING-H2_RNF181 169 214 - -
Lal9g1606 300 MobiDBLite consensus disorder prediction 45 68 - -
Lal9g1606 300 MobiDBLite consensus disorder prediction 45 65 - -
Lal9g1606 300 SMART ring_2 170 210 IPR001841 -
Lal9g1606 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 217 IPR013083 -
Lal9g1606 300 SUPERFAMILY RING/U-box 150 216 - -
Lal9g1606 300 Pfam Ring finger domain 169 211 IPR001841 -
Lal9g1606 300 Pfam zinc-ribbon 8 42 IPR039525 GO:0061630
Lal9g1606 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 6 248 - -
Lal9g1606 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 248 - -
Lal9g1606 300 Pfam Protein of unknown function (DUF1117) 225 242 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1606 Lal-Chr9 18377317 18378317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1606 105 217 C3H Transcription Factor Family AT5G01980 41.593 1.16e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1606 - K11982 gmx:100798563 286.189