Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1600 ATGAGTTCAGGCACCAATTTAGTGACCACAGCCATTGGTTTTGTGCTGAGTGCAACTTTCATTGTATTTGTATGCACAAGAATAATTTGTGGAAGACTAACAGGGAGTATGGGATTACGGAATCTACATGAGATTGAATCAATAAGAAGAGATATAGAACAGCCAGAACATCATGTTAATGGACCTGATCCTGCTCTTATTGCTGCAATCCCTTCTTTCAAGTTCAACCAAGAGGCCTTCACTTCCATTCAATATACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAGTTATTACGCATAATACCAAAATGTGGCCATAGTTTTCATCTTGATTGCATTGATTTGTGGCTGAGAAAACAACCAGCATGCCCCTTATGCCGTTTGCCACTGCAAAATGCTTGTGACACAAAACATGTAGGACCTATTACAATTATTACCATCAACCAATCTCTTGATGAGTCTAATAGTCCAGAAAGGAACATAAACAATGAGTTATGCTAA 510 0.3824 MSSGTNLVTTAIGFVLSATFIVFVCTRIICGRLTGSMGLRNLHEIESIRRDIEQPEHHVNGPDPALIAAIPSFKFNQEAFTSIQYTQCVICLADYKEQELLRIIPKCGHSFHLDCIDLWLRKQPACPLCRLPLQNACDTKHVGPITIITINQSLDESNSPERNINNELC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1600 169 Pfam Ring finger domain 87 130 IPR001841 -
Lal9g1600 169 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lal9g1600 169 PANTHER OS11G0150450 PROTEIN 1 157 - -
Lal9g1600 169 SUPERFAMILY RING/U-box 87 152 - -
Lal9g1600 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Lal9g1600 169 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1600 Lal-Chr9 18354386 18356234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1600 2 167 C3H Transcription Factor Family AT1G04360 34.595 7.42e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1600 - - gmx:100780922 240.736